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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
129
monocyte
88
heart
83
stomach
80
kidney
72
brain
68
lung
67
muscle of arm
64
HeLa-S3
62
small intestine
61
A549
61
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
51
neural progenitor cell
50
CD8-positive, alpha-beta T cell
48
liver
47
thymus
44
islet of Langerhans
44
right lung
42
B cell
42
hematopoietic multipotent progenitor cell
42
right kidney
41
endothelial cell
40
K562
40
renal cortex interstitium
39
renal pelvis
39
retina
36
hepatocyte
36
left kidney
34
heart left ventricle
33
spinal cord
33
spleen
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
31
CD14-positive monocyte
31
adipose tissue
31
macrophage
26
regulatory T cell
25
MCF-7
25
adipocyte
25
smooth muscle cell
24
body of pancreas
24
pancreatic ductal cell
24
tibial nerve
23
EndoC_BH1
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
natural killer cell
22
pericyte cell
22
sigmoid colon
22
trophoblast cell
21
T cell
21
T-helper 17 cell
21
caudate nucleus
foreskin keratinocyte
21
keratinocyte
21
subcutaneous adipose tissue
20
breast cancer cell
20
coronary artery
20
glomerular endothelial cell
20
mononuclear cell
20
pancreas
20
pigmented layer of retina
19
heart right ventricle
19
ovary
19
psoas muscle
18
HFFc6
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
foreskin fibroblast
18
mesenchymal stem cell
18
pancreatic beta cell
18
right atrium auricular region
18
substantia nigra
17
T-helper 2 cell
17
astrocyte
17
cardiac muscle cell
17
muscle of trunk
17
omental fat pad
17
pancreatic acinar cell
17
pancreatic alpha cell
17
thyroid gland
17
tibial artery
17
transverse colon
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
gastrocnemius medialis
16
induced pluripotent stem cell
16
layer of hippocampus
16
skeletal muscle tissue
16
testis
15
CD4-positive, alpha-beta T cell
15
HepG2
15
ascending aorta
15
cerebellum
15
fibroblast of cardiac tissue
15
neutrophil
15
osteoblast
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
skeletal muscle myoblast
15
upper lobe of left lung
14
GM12878
14
H9
14
endocrine pancreas
14
frontal cortex
14
mammary gland epithelial cell
13
aorta
13
excitatory neuron
13
neurosphere
13
prostate gland
13
putamen
13
skeletal muscle satellite cell
13
temporal lobe
12
Peyer's patch
12
bronchial epithelial cell
12
fibroblast of dermis
12
left renal cortex interstitium
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
11
Ammon's horn
11
erythroblast
11
left cardiac atrium
11
left renal pelvis
11
lymphoblastoid cell line
11
mammary epithelial cell
11
right renal pelvis
10
22Rv1
10
epithelial cell of prostate
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
9
Rhabdomyosarcoma
9
SK-N-SH
9
breast epithelium
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
esophagus squamous epithelium
9
hepatic stellate cell
9
kidney tubule cell
9
liposarcoma
9
neuronal stem cell
9
parathyroid adenoma
9
trophoblast
9
vagina
8
B-lymphoblastoid cell line
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
tongue
7
HEK293
7
IMR-90
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
foreskin melanocyte
7
limb
7
mature neutrophil
7
memory B cell
7
mesendoderm
7
right lobe of liver
7
skin fibroblast
7
stomach smooth muscle
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
WERI-Rb-1
cardiomyocytes
foreskin keratinocyte
month_released!
June, 2020
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP