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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
116
monocyte
56
HeLa-S3
44
H1-hESC
40
CD8-positive, alpha-beta T cell
35
neural progenitor cell
32
fibroblast
32
islet of Langerhans
31
endothelial cell
31
heart
31
kidney
30
macrophage
30
retina
28
K562
27
brain
27
liver
26
stomach
24
hepatocyte
23
A549
20
B cell
20
breast cancer cell
20
pericyte cell
20
pigmented layer of retina
20
placenta
20
smooth muscle cell
19
CD14-positive monocyte
19
HFFc6
19
adipocyte
19
small intestine
18
adrenal gland
18
lung
18
muscle of leg
17
embryonic stem cell
17
heart left ventricle
17
muscle of arm
16
adipose tissue
16
endothelial cell of hepatic sinusoid
16
keratinocyte
16
large intestine
16
thymus
15
EndoC_BH1
15
T cell
15
pancreatic ductal cell
14
HepG2
14
coronary artery
14
pancreas
14
subcutaneous adipose tissue
14
tibial nerve
13
GM12878
13
common myeloid progenitor, CD34-positive
13
muscle of back
13
retinal pigment epithelial cell
13
spinal cord
12
MCF-7
12
astrocyte
12
caudate nucleus
12
excitatory neuron
12
hematopoietic multipotent progenitor cell
12
left lung
12
lymphoblastoid cell line
12
neuroblastoma cell
12
pancreatic beta cell
12
regulatory T cell
12
spleen
12
tibial artery
11
endothelial cell of umbilical vein
11
mesenchymal stem cell
11
natural killer cell
11
osteoblast
11
pancreatic acinar cell
11
renal pelvis
11
right atrium auricular region
11
right lung
10
Rhabdomyosarcoma
10
cardiac muscle cell
10
gastric cancer cell
10
pancreatic alpha cell
10
putamen
10
right kidney
10
skeletal muscle myoblast
9
CD4-positive, alpha-beta memory T cell
9
body of pancreas
9
diffuse intrinsic pontine glioma
9
erythroblast
9
frontal cortex
9
liposarcoma
9
pancreatic delta cell
9
renal cortex interstitium
8
Ammon's horn
8
B-lymphoblastoid cell line
8
H9
8
ascending aorta
8
fibroblast cell line
8
fibroblast of cardiac tissue
8
foreskin fibroblast
8
mammary epithelial cell
8
mammary gland epithelial cell
8
neutrophil
8
pituitary stalk
8
skeletal muscle satellite cell
8
substantia nigra
7
CD4-positive helper T cell
7
CD8-positive, alpha-beta memory T cell
7
Jurkat
7
esophageal adenocarcinoma
7
heart right ventricle
7
left cardiac atrium
7
left kidney
7
lymphocyte
7
neuronal stem cell
7
omental fat pad
7
psoas muscle
7
trophoblast cell
6
Chondroid Chordoma
6
GM19240
6
HUES8
6
IMR-90
6
cerebellum
6
chondrocyte
6
colon epithelial cell
6
epithelial cell of prostate
6
fibroblast of lung
6
foreskin keratinocyte
6
hESC cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
mesendoderm
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
ovary
6
prostate gland
6
thyroid gland
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
Caco-2 cell
5
CyT49
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM19238
5
GM19239
5
HAP-1
5
HCT-116 cell
5
HEK293
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
LoVo cell
5
MM.1S
5
OCI-LY7
5
PC-9
5
SGBS preadipocytes
5
acute myeloid leukemia
5
amygdala
5
aorta
5
bronchial epithelial cell
5
choroid plexus epithelial cell
5
enterocyte
5
glutamatergic neuron
5
hepatic stellate cell
5
midbrain
5
osteosarcoma
5
prostate cancer cell line
5
skeletal muscle fiber
5
skeletal muscle tissue
5
skin fibroblast
5
smooth muscle cell of the coronary artery
5
temporal lobe
5
transverse colon
5
trophoblast
5
type I muscle cell
5
upper lobe of left lung
4
22Rv1
4
B-lymphocyte
4
C1 segment of cervical spinal cord
4
CD1c-positive myeloid dendritic cell
4
CD4-positive, alpha-beta T cell
4
CMK
4
COLO205
4
GM12875
4
GM12891
4
GM12892
4
GM18505
4
GM18507
4
GM19099
4
GM19193
4
GM23248
4
H7-hESC
4
HAC cell
4
HBMEC cell
4
HS-SY-2 cell
4
HuH-7
4
LHCN-M2
4
LNCAP
Life stage
1
embryonic
Date released
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
1
September, 2022
Software used
3
macs
r
1
abc
1
chromhmm
encode-ccres
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_term_name!
kidney tubule cell
files.file_type!
bed bed9+
software_used.software.name!
encode-ccres
r
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP