Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
pCHi-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
in vitro differentiated cells
1
stem cell
Biosample term
130
monocyte
90
heart
84
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
63
HeLa-S3
62
small intestine
61
A549
60
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
H1-hESC
53
common myeloid progenitor, CD34-positive
52
left lung
48
CD8-positive, alpha-beta T cell
48
liver
47
thymus
45
islet of Langerhans
45
right lung
42
right kidney
40
K562
40
endothelial cell
40
renal cortex interstitium
40
renal pelvis
40
retina
39
B cell
36
left kidney
34
heart left ventricle
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
hepatocyte
32
spleen
31
macrophage
30
adipose tissue
30
fibroblast
28
regulatory T cell
25
MCF-7
25
tibial nerve
23
EndoC_BH1
23
T-helper 1 cell
23
body of pancreas
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
pericyte cell
22
sigmoid colon
21
T cell
21
T-helper 17 cell
21
glomerular endothelial cell
21
pancreas
21
pancreatic ductal cell
21
subcutaneous adipose tissue
20
breast cancer cell
20
keratinocyte
20
mononuclear cell
20
natural killer cell
20
pigmented layer of retina
20
smooth muscle cell
19
coronary artery
19
foreskin keratinocyte
19
heart right ventricle
19
ovary
19
psoas muscle
19
right atrium auricular region
18
HFFc6
18
endothelial cell of umbilical vein
18
foreskin fibroblast
18
pancreatic beta cell
18
substantia nigra
18
tibial artery
17
T-helper 2 cell
17
gastrocnemius medialis
17
omental fat pad
17
pancreatic alpha cell
17
testis
17
thyroid gland
17
transverse colon
17
trophoblast cell
16
CD14-positive monocyte
16
HepG2
16
astrocyte
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
layer of hippocampus
16
muscle of trunk
16
osteoblast
16
pancreatic acinar cell
16
skeletal muscle tissue
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
ascending aorta
15
cerebellum
15
fibroblast of lung
15
frontal cortex
15
neutrophil
15
pancreatic delta cell
15
skeletal muscle myoblast
14
GM12878
14
endocrine pancreas
14
prostate gland
14
putamen
13
H9
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
neurosphere
13
skeletal muscle satellite cell
13
temporal lobe
12
Ammon's horn
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary gland epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
11
excitatory neuron
11
fibroblast of dermis
11
glomerular visceral epithelial cell
left cardiac atrium
11
left renal pelvis
11
mammary epithelial cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
choroid plexus epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
hepatic stellate cell
10
kidney tubule cell
10
lymphocyte
10
pancreatic stellate cell
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
colonic mucosa
9
erythroblast
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
NAMALWA cell
8
cardiac muscle cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
retinal pigment epithelial cell
8
skeletal muscle fiber
8
skin fibroblast
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
IMR-90
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
kidney glomerular epithelial cell
7
mature neutrophil
7
memory B cell
7
mesenchymal stem cell
7
renal cortical epithelial cell
7
right lobe of liver
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
Date released
1
March, 2020
Software used
1
nospecificsoft_customcode
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
biosample_term_name!
layer of hippocampus
left cardiac atrium
biosample_type!
in vitro differentiated cells
lab.title!
Jesse Engreitz, Stanford University
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP