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Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
110
monocyte
55
HeLa-S3
47
CD8-positive, alpha-beta T cell
43
H1-hESC
34
endothelial cell
33
fibroblast
31
neural progenitor cell
30
kidney
29
retina
28
heart
27
stomach
26
macrophage
23
K562
22
smooth muscle cell
21
B cell
21
adipocyte
21
pericyte cell
20
brain
20
breast cancer cell
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
hepatocyte
19
muscle of arm
18
adrenal gland
18
lung
17
placenta
17
small intestine
16
islet of Langerhans
16
large intestine
16
liver
16
muscle of leg
15
common myeloid progenitor, CD34-positive
15
keratinocyte
15
muscle of back
14
HepG2
14
cardiac muscle cell
14
heart left ventricle
14
pancreatic ductal cell
14
thymus
13
GM12878
13
H9
13
left lung
13
natural killer cell
13
pancreas
13
renal cortex interstitium
13
renal pelvis
13
retinal pigment epithelial cell
13
spinal cord
13
spleen
12
CD4-positive, alpha-beta T cell
12
EndoC_BH1
12
astrocyte
12
excitatory neuron
12
foreskin fibroblast
12
hematopoietic multipotent progenitor cell
12
mammary epithelial cell
12
neuroblastoma cell
12
neuronal stem cell
12
pancreatic beta cell
12
right lung
11
MCF-7
11
endothelial cell of hepatic sinusoid
10
Rhabdomyosarcoma
10
T cell
10
embryonic stem cell
10
gastric cancer cell
10
osteoblast
10
pancreatic acinar cell
10
pancreatic alpha cell
9
diffuse intrinsic pontine glioma
9
endothelial cell of umbilical vein
9
erythroblast
9
liposarcoma
9
mesenchymal stem cell
9
pancreatic delta cell
9
right kidney
8
A549
8
B-lymphoblastoid cell line
8
coronary artery
8
fibroblast cell line
8
foreskin keratinocyte
8
pituitary stalk
8
skeletal muscle myoblast
7
CD4-positive helper T cell
7
Jurkat
7
esophageal adenocarcinoma
7
left cardiac atrium
7
mast cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
regulatory T cell
7
skeletal muscle satellite cell
6
Chondroid Chordoma
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
Rh-4 cell
6
SGBS preadipocytes
6
T-helper 1 cell
6
adipose tissue
6
bronchial epithelial cell
6
chondrocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
hESC cell
6
left kidney
6
lymphocyte
6
mammary gland epithelial cell
6
neuroblastoma cell line
6
sigmoid colon
6
testis
6
tibial nerve
6
trophoblast cell
6
upper lobe of left lung
5
cardiac fibroblast
5
CD4-positive, alpha-beta memory T cell
5
CyT49
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
HAP-1
5
HCT-116 cell
5
HL-60
5
HT-29
5
MM.1S
5
OCI-LY7
5
PC-9
5
Peyer's patch
5
SK-N-MC
5
T-cell acute lymphoblastic leukemia
5
acute myeloid leukemia
5
choroid plexus epithelial cell
5
endothelial cell of lymphatic vessel
5
enterocyte
5
glutamatergic neuron
5
hepatic stellate cell
5
lymphoblastoid cell line
5
mesendoderm
5
osteosarcoma
5
ovary
5
prostate cancer cell line
5
skeletal muscle fiber
5
skin fibroblast
5
smooth muscle cell of the coronary artery
5
tibial artery
5
type I muscle cell
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
Ammon's horn
4
B-lymphocyte
4
BE(2)-C
4
BJ cell
4
CD1c-positive myeloid dendritic cell
4
CMK
4
COLO205
4
Caco-2 cell
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
GM23248
4
HAC cell
4
HBMEC cell
4
HS-SY-2 cell
4
Ishikawa
4
KARPAS-422 cell
4
LHCN-M2
4
LoVo cell
4
MDA-MB-231 cell
4
MG63
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
PANC-1 cell
4
PC-3
4
RPMI8226
4
RS4-11 cell
4
RWPE1
4
SK-N-DZ
4
SK-N-SH
4
SW480
4
T-cell
4
WERI-Rb-1
4
acute myeloid leukemia cell
4
aortic endothelial cell
4
caudate nucleus
4
colon epithelial cell
4
cortical cell of adrenal gland
4
diffuse large B-cell lymphoma
4
erythroid cell
Life stage
1
embryonic
Date released
3
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_term_name!
left renal pelvis
software_used.software.name!
r
Showing 6 of 6 results
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Download
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP