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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
110
monocyte
59
HeLa-S3
48
heart
45
H1-hESC
44
stomach
43
kidney
41
A549
40
CD8-positive, alpha-beta T cell
39
brain
38
neural progenitor cell
34
K562
34
muscle of arm
33
lung
33
placenta
33
small intestine
32
adrenal gland
32
retina
31
endothelial cell
30
fibroblast
29
large intestine
29
muscle of leg
28
B cell
28
thymus
27
common myeloid progenitor, CD34-positive
26
left lung
26
liver
26
muscle of back
23
CD14-positive monocyte
23
hematopoietic multipotent progenitor cell
23
macrophage
23
right lung
21
adipocyte
21
hepatocyte
21
pericyte cell
21
renal pelvis
21
right kidney
21
smooth muscle cell
20
breast cancer cell
20
pigmented layer of retina
20
renal cortex interstitium
20
spinal cord
19
HFFc6
19
adipose tissue
18
CD4-positive, alpha-beta memory T cell
18
heart left ventricle
18
keratinocyte
18
left kidney
17
MCF-7
17
T cell
17
spleen
16
islet of Langerhans
15
HepG2
15
pancreas
14
CD8-positive, alpha-beta memory T cell
14
GM12878
14
pancreatic ductal cell
14
retinal pigment epithelial cell
13
astrocyte
13
fibroblast of cardiac tissue
13
mononuclear cell
13
natural killer cell
13
regulatory T cell
13
sigmoid colon
13
trophoblast cell
12
EndoC_BH1
12
excitatory neuron
12
mesenchymal stem cell
12
neuroblastoma cell
12
osteoblast
12
pancreatic beta cell
11
coronary artery
11
endothelial cell of hepatic sinusoid
11
foreskin fibroblast
11
mammary gland epithelial cell
11
psoas muscle
10
Rhabdomyosarcoma
10
cardiac muscle cell
10
embryonic stem cell
10
endothelial cell of umbilical vein
10
gastric cancer cell
10
ovary
10
pancreatic acinar cell
10
pancreatic alpha cell
10
thyroid gland
10
tibial nerve
9
H9
9
body of pancreas
9
caudate nucleus
9
diffuse intrinsic pontine glioma
9
erythroblast
9
foreskin keratinocyte
9
gastrocnemius medialis
9
layer of hippocampus
9
liposarcoma
lymphocyte
9
pancreatic delta cell
9
prostate gland
9
skeletal muscle myoblast
9
skin fibroblast
9
tibial artery
9
transverse colon
8
B-lymphoblastoid cell line
8
bronchial epithelial cell
8
fibroblast cell line
8
fibroblast of dermis
8
fibroblast of lung
8
heart right ventricle
8
mammary epithelial cell
8
muscle of trunk
8
pituitary stalk
8
skeletal muscle satellite cell
7
CD4-positive helper T cell
7
GM19240
7
IMR-90
7
Jurkat
7
T-helper 1 cell
7
T-helper 2 cell
7
endocrine pancreas
7
esophageal adenocarcinoma
7
neuronal stem cell
7
right atrium auricular region
7
trophoblast
7
upper lobe of left lung
6
22Rv1
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19238
6
GM19239
6
HAP-1
6
HEK293
6
HL-60
6
HT-29
6
HUES8
6
KARPAS-422 cell
6
LoVo cell
6
NAMALWA cell
6
Peyer's patch
6
chondrocyte
6
choroid plexus epithelial cell
6
colon epithelial cell
6
endometrium adenocarcinoma
6
hESC cell
6
immortal human breast epithelial cell line cell
6
kidney tubule cell
6
left cardiac atrium
6
mesendoderm
6
neuroblastoma cell line
6
testis
5
cardiac fibroblast
5
Ammon's horn
5
CD1c-positive myeloid dendritic cell
5
CMK
5
CyT49
5
Ewing sarcoma
5
GM12875
5
GM12891
5
GM12892
5
GM18507
5
GM23248
5
H7-hESC
5
HCT-116 cell
5
HuH-7
5
LHCN-M2
5
MG63
5
MM.1S
5
OCI-LY7
5
SGBS preadipocytes
5
SK-N-SH
5
WERI-Rb-1
5
acute myeloid leukemia
5
aorta
5
ascending aorta
5
chorion membrane
5
chorionic villus
5
cingulate gyrus
5
enterocyte
5
epithelial cell of prostate
5
esophagus
5
frontal cortex
5
glomerular visceral epithelial cell
5
glutamatergic neuron
5
hepatic stellate cell
5
lymphoblastoid cell line
5
mucosa of rectum
5
neurosphere
5
omental fat pad
5
osteosarcoma
5
prostate cancer cell line
5
putamen
5
right renal pelvis
Life stage
2
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_term_name!
lymphocyte
files.file_type!
bed bed9+
software_used.software.name!
encode-ccres
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP