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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
in vitro differentiated cells
stem cell
Biosample term
115
monocyte
87
heart
86
stomach
72
brain
71
kidney
68
lung
66
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
57
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
51
neural progenitor cell
48
thymus
47
CD8-positive, alpha-beta T cell
47
liver
45
right lung
43
hematopoietic multipotent progenitor cell
41
B cell
41
K562
41
right kidney
40
islet of Langerhans
renal cortex interstitium
39
renal pelvis
36
left kidney
35
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
spleen
31
CD14-positive monocyte
31
heart left ventricle
30
adipose tissue
30
endothelial cell
27
adipocyte
26
MCF-7
26
hepatocyte
25
regulatory T cell
24
body of pancreas
24
macrophage
24
retina
23
natural killer cell
23
sigmoid colon
23
tibial nerve
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
21
EndoC_BH1
21
T-helper 1 cell
21
caudate nucleus
20
breast cancer cell
20
fibroblast
20
glomerular endothelial cell
20
mononuclear cell
20
ovary
20
psoas muscle
19
T-helper 17 cell
19
foreskin fibroblast
19
keratinocyte
19
smooth muscle cell
18
HFFc6
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
pancreas
18
pancreatic ductal cell
18
subcutaneous adipose tissue
18
substantia nigra
18
thyroid gland
18
transverse colon
17
T cell
17
heart right ventricle
17
muscle of trunk
17
right atrium auricular region
17
testis
16
HepG2
16
chorionic villus
16
coronary artery
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
mesenchymal stem cell
16
omental fat pad
16
skeletal muscle tissue
16
tibial artery
16
upper lobe of left lung
15
GM12878
15
cerebellum
15
mammary gland epithelial cell
15
neutrophil
15
skeletal muscle myoblast
14
CD4-positive, alpha-beta T cell
14
H9
14
T-helper 2 cell
14
ascending aorta
14
cardiac muscle cell
14
endocrine pancreas
14
fibroblast of cardiac tissue
14
frontal cortex
14
prostate gland
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
neurosphere
13
osteoblast
13
putamen
13
temporal lobe
12
fibroblast of dermis
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
neuronal stem cell
11
Ammon's horn
11
breast epithelium
11
epithelial cell of prostate
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pericyte cell
11
retinal pigment epithelial cell
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
left renal cortex interstitium
10
lymphocyte
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
esophagus
9
glomerular visceral epithelial cell
9
left renal pelvis
9
liposarcoma
9
pancreatic delta cell
9
parathyroid adenoma
9
right renal pelvis
9
skeletal muscle satellite cell
9
skin fibroblast
9
thoracic aorta
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
choroid plexus epithelial cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
astrocyte
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mast cell
7
mature neutrophil
7
pancreatic beta cell
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
renal cortex interstitium
biosample_type!
stem cell
files.file_type!
bigWig
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP