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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
23
CD4-positive, alpha-beta memory T cell
13
common myeloid progenitor, CD34-positive
11
T-helper 17 cell
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
8
22Rv1
8
H1-hESC
8
bronchial epithelial cell
8
epithelial cell of prostate
8
neutrophil
7
B cell
7
CD8-positive, alpha-beta memory T cell
7
WI38
7
fibroblast of lung
7
keratinocyte
7
osteoblast
6
dermis lymphatic vessel endothelial cell
6
fibroblast of dermis
5
lung microvascular endothelial cell
5
skeletal muscle myoblast
5
skeletal muscle tissue
4
CD14-positive monocyte
4
CD1c-positive myeloid dendritic cell
4
GM06990
4
GM12864
4
GM12865
4
KOPT-K1
4
L1-S8
4
PC-9
4
Panc1
4
T-helper 1 cell
4
T-helper 2 cell
4
adipocyte
4
astrocyte
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
astrocyte of the spinal cord
4
brain microvascular endothelial cell
4
choroid plexus epithelial cell
4
epithelial cell of esophagus
4
epithelial cell of proximal tubule
4
fibroblast of gingiva
4
fibroblast of mammary gland
4
fibroblast of peridontal ligament
4
fibroblast of pulmonary artery
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
4
fibroblast of villous mesenchyme
4
glomerular endothelial cell
4
hematopoietic multipotent progenitor cell
4
iris pigment epithelial cell
4
kidney epithelial cell
4
mononuclear cell
non-pigmented ciliary epithelial cell
4
pulmonary artery endothelial cell
4
regulatory T cell
4
renal cortical epithelial cell
4
retinal pigment epithelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
4
stromal cell of bone marrow
3
CD4-positive, alpha-beta T cell
3
CWRU1
3
GM12891
3
GM12892
3
HK-2 cell
3
L1-S8R
3
NCI-H460 cell
3
NT2-D1 cell
3
T cell
3
aortic endothelial cell
3
chorion membrane
3
colon carcinoma
3
colon epithelial cell
3
endocrine pancreas
3
epidermal melanocyte
3
epithelial cell of amnion
3
fibroblast of cardiac tissue
3
germinal center
3
hepatocyte
3
hepatocyte(AFP)
3
mammary gland epithelial cell
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
pancreatic ductal cell
3
pericyte cell
3
regular cardiac myocyte
2
T-cell
2
cardiac muscle cell
2
dermis microvascular lymphatic vessel endothelial cell
1
cardiac fibroblast
1
BL-2 cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta T cell
1
DG-75 cell
1
GM08714
1
GM10248
1
GM10266
1
GM12801
1
GM12873
1
GM12874
1
GM12875
1
GM13976
1
GM13977
1
HCEC 1CT
1
HK-2
1
JVM-2 cell
1
KARPAS-422 cell
1
NCI-H460
1
NT2/D1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
RKO
1
SUDHL5
1
U-266 cell
1
Z-138
1
adipose tissue
1
amniotic epithelial cell
1
brain pericyte
1
cardiac fibroblast
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell
1
excitatory neuron
1
hippocampal neuron
1
leukocyte
1
lower motor neuron
1
mammary epithelial cell
1
mesenchymal stem cell
1
myotube
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
skeletal muscle satellite cell
1
smooth muscle cell
1
smooth muscle cell of the coronary artery
type I muscle cell
1
type II muscle cell
Life stage
15
adult
4
embryonic
4
unknown
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
non-pigmented ciliary epithelial cell
type I muscle cell
Showing 4 of 4 results
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Download
FileSet
DSR204RCX
released
Annotation file set
: Candidate regulatory elements for BSS01279 mononuclear cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR717BFL
released
Annotation file set
: Target gene predictions for BSS01279 mononuclear cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR899YVI
released
Annotation file set
: Chromatin states for BSS01279 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR960SRS
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mononuclear cell
Lab:
AMP-T2D consortium
Project:
AMP