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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
in vitro differentiated cells
Biosample term
128
monocyte
86
heart
86
stomach
80
kidney
72
brain
67
lung
66
muscle of arm
64
HeLa-S3
62
A549
62
small intestine
61
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
50
neural progenitor cell
48
CD8-positive, alpha-beta T cell
47
liver
46
thymus
45
right lung
44
B cell
44
endothelial cell
43
hematopoietic multipotent progenitor cell
41
K562
40
right kidney
39
islet of Langerhans
39
renal cortex interstitium
39
renal pelvis
39
retina
36
left kidney
35
fibroblast
35
spinal cord
34
macrophage
33
hepatocyte
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
heart left ventricle
29
adipocyte
29
adipose tissue
27
smooth muscle cell
26
MCF-7
26
regulatory T cell
25
natural killer cell
25
pancreatic ductal cell
24
pericyte cell
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
22
sigmoid colon
21
EndoC_BH1
21
T-helper 1 cell
21
keratinocyte
20
body of pancreas
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
pigmented layer of retina
19
T-helper 17 cell
19
foreskin fibroblast
19
ovary
19
tibial nerve
18
HFFc6
18
caudate nucleus
18
gastrocnemius medialis
18
pancreatic beta cell
18
thyroid gland
18
transverse colon
17
astrocyte
17
embryonic stem cell
17
mesenchymal stem cell
17
muscle of trunk
17
osteoblast
17
pancreas
17
pancreatic acinar cell
17
pancreatic alpha cell
17
psoas muscle
17
subcutaneous adipose tissue
16
cardiac muscle cell
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
heart right ventricle
16
induced pluripotent stem cell
16
layer of hippocampus
16
retinal pigment epithelial cell
16
skeletal muscle tissue
16
upper lobe of left lung
15
GM12878
15
HepG2
15
coronary artery
15
mammary gland epithelial cell
15
pancreatic delta cell
15
substantia nigra
14
H9
14
T-helper 2 cell
14
endocrine pancreas
14
neutrophil
14
prostate gland
14
right atrium auricular region
14
skeletal muscle myoblast
13
CD4-positive, alpha-beta T cell
13
Peyer's patch
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
13
skeletal muscle satellite cell
13
temporal lobe
12
fibroblast of dermis
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
neuronal stem cell
12
omental fat pad
12
tibial artery
11
breast epithelium
11
cerebellum
11
epithelial cell of prostate
11
glomerular visceral epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
10
22Rv1
10
Rhabdomyosarcoma
10
aorta
10
ascending aorta
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
frontal cortex
10
gastric cancer cell
10
hepatic stellate cell
10
kidney tubule cell
10
left cardiac atrium
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
10
skin fibroblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
choroid plexus epithelial cell
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
parathyroid adenoma
9
right renal cortex interstitium
9
thoracic aorta
9
tongue
9
trophoblast
9
vagina
8
Ammon's horn
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mast cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
putamen
8
skeletal muscle fiber
7
AG04449 cell
7
AG04450 cell
7
B-lymphoblastoid cell line
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
esophagus
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast cell line
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mature neutrophil
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
1
June, 2020
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
month_released!
March, 2020
May, 2020
organ_slims!
testis
Showing 8 of 8 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP