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Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
DNase-seq
Available data
1
bed bed3+
1
bed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
40
stomach
39
heart
33
lung
33
muscle of arm
31
brain
31
kidney
29
muscle of leg
29
small intestine
28
adrenal gland
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
large intestine
26
left lung
26
placenta
22
A549
22
right lung
20
renal cortex interstitium
20
right kidney
20
thymus
19
hematopoietic multipotent progenitor cell
19
renal pelvis
18
left kidney
15
liver
15
spinal cord
15
spleen
14
B cell
14
CD4-positive, alpha-beta memory T cell
14
heart left ventricle
11
CD4-positive, alpha-beta T cell
11
foreskin keratinocyte
10
MCF-7
10
endothelial cell of umbilical vein
10
sigmoid colon
9
K562
9
fibroblast of lung
9
foreskin fibroblast
9
trophoblast cell
8
CD14-positive monocyte
8
CD8-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
adipocyte
8
body of pancreas
8
chorionic villus
8
gastrocnemius medialis
8
heart right ventricle
8
muscle of trunk
8
ovary
8
temporal lobe
8
thyroid gland
8
transverse colon
7
H9
7
Peyer's patch
7
adipose tissue
7
cardiac muscle cell
7
endocrine pancreas
7
layer of hippocampus
7
left cardiac atrium
7
mature neutrophil
7
mononuclear cell
7
neurosphere
7
psoas muscle
7
testis
7
tibial nerve
7
upper lobe of left lung
6
HeLa-S3
6
T-helper 1 cell
6
angular gyrus
6
aorta
6
caudate nucleus
6
dermis blood vessel endothelial cell
6
esophagus squamous epithelium
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
natural killer cell
6
pancreas
6
retina
6
right renal pelvis
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
subcutaneous abdominal adipose tissue
6
substantia nigra
5
CD14-positive, CD16-negative classical monocyte
5
SK-N-SH
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
ascending aorta
5
breast epithelium
5
cingulate gyrus
5
colonic mucosa
5
duodenal mucosa
5
embryonic stem cell
5
esophagus muscularis mucosa
5
fibroblast of dermis
5
gastroesophageal sphincter
5
mammary epithelial cell
5
mesenchymal stem cell
5
mucosa of rectum
5
neural progenitor cell
5
omental fat pad
5
parathyroid adenoma
5
regulatory T cell
5
right renal cortex interstitium
5
stomach smooth muscle
5
thoracic aorta
4
22Rv1
4
GM12878
4
HEK293
4
HepG2
4
SK-N-DZ
4
T cell
4
T-cell
4
alternatively activated macrophage
4
bronchial epithelial cell
4
cardiac fibroblast
4
coronary artery
4
endodermal cell
4
epithelial cell of prostate
4
erythroblast
4
esophagus
4
eye
4
fibroblast of breast
4
foreskin melanocyte
4
keratinocyte
4
mesodermal cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neutrophil
4
peripheral blood mononuclear cell
4
prostate gland
4
right cardiac atrium
4
tibial artery
4
tongue
4
trophoblast
4
vagina
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
H1-hESC
3
HL-60
3
IMR-90
3
LNCaP clone FGC
3
MCF 10A
3
NB4
3
SK-N-MC
3
T47D
3
WERI-Rb-1
3
cerebellum
3
chorion membrane
3
choroid plexus epithelial cell
3
endometrium adenocarcinoma
3
epithelial cell of proximal tubule
3
fibroblast of cardiac tissue
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
germinal matrix
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
islet of Langerhans
3
kidney tubule cell
3
limb
3
lung microvascular endothelial cell
3
mammary gland epithelial cell
3
naive T cell
3
neural cell
3
osteoblast
3
retinal pigment epithelial cell
3
right atrium auricular region
3
skeletal muscle satellite cell
3
subcutaneous adipose tissue
3
suprapubic skin
3
urinary bladder
3
uterus
2
A172
2
A673
2
ACC112
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803
2
AG10803 cell
2
Ammon's horn
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caco-2 cell
2
Caki2
2
DND-41
Life stage
2
embryonic
Date released
1
February, 2021
1
September, 2022
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
nospecificsoft_customcode
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
software_used.software.name!
nospecificsoft_customcode
Showing 2 of 2 results
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP