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Annotation type
  • 4candidate regulatory elements
  • 1binding sites
  • 1chromatin state
  • 1histone modifications
  • 1target gene predictions
Annotation Category
  • 7cis-regulatory elements
  • 1Target gene links
Annotation type Category
  • 8ChIP-seq
  • 5DNase-seq
Available data
  • 7bed bed3+
  • 1bed bed9
File set status
  • 8released
Genome assembly (visualization)
  • 8hg19
  • 1GRCh38
Organism
  • 8Homo sapiens
Biosample type
  • 7in vitro differentiated cells
  • 1cell line
Biosample term
  • 54H1-hESC
  • 23trophoblast cell
  • 16H9
  • 16chorionic villus
  • 11trophoblast
  • 10endodermal cell
  • 8mesodermal cell
  • 6H7-hESC
  • 6HUES6
  • 6HUES8
  • 5CyT49
  • 5H4
  • 5HUES64
  • 5ectodermal cell
  • 4ELF-1
  • 4HUES48
  • 4UCSF-4
  • 4embryonic facial prominence
  • 3ES-I3
  • 3cardiac mesoderm primordium
  • 3hESC H9
  • 3primordial germ cell
  • 2first pancreatic bud
  • 1H1
  • 1H7
  • 1cardiogenic mesoderm
  • 1embryonic fibroblast
  • 1mesodermal cell (lineage marker-negative)
  • 1mesodermal cell (pacemaker intermediate)
  • 1morula
  • 1placental hematopoietic stem cell
  • 1trophoblast giant cell
Organ
  • 8embryo
Life stage
  • 6embryonic
Date released
  • 5February, 2021
  • 3September, 2022
Software used
  • 3encode-ccres
  • 2macs
  • 2r
  • 1chromhmm
Lab
  • 8AMP-T2D consortium
Project
  • 8AMP
Collection Tags
  • 3ENCODE
  • 3EpiMap
  • 2ChIP-Atlas
RFA
  • 8AMP

Showing 8 of 8 results

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  • FileSet

    DSR641CAC

    released

    Annotation file set: Candidate regulatory elements for BSS01264 mesodermal cell from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR311IQE

    released

    Annotation file set: Target gene predictions for BSS01264 mesodermal cell from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR465FPM

    released

    Annotation file set: Chromatin states for BSS01264 using the 18-state Roadmap model from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR274BAE

    released

    Annotation file set: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesodermal cell
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR934LHC

    released

    Annotation file set: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesodermal cell
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR125OYP

    released

    Annotation file set: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesodermal cell
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR404TZP

    released

    Annotation file set: Histone modifications annotation for Blood Hemogenic_mesoderm from ChIP-atlas
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR849BKN

    released

    Annotation file set: Binding sites annotation for Pluripotent stem cell hESC_derived_mesodermal_cells from ChIP-atlas
    Lab: AMP-T2D consortium
    Project: AMP
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