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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
130
monocyte
53
common myeloid progenitor, CD34-positive
47
CD8-positive, alpha-beta T cell
39
B cell
33
endothelial cell
32
CD4-positive, alpha-beta memory T cell
31
hepatocyte
regulatory T cell
27
macrophage
25
fibroblast
23
T-helper 1 cell
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
T cell
21
T-helper 17 cell
21
glomerular endothelial cell
20
mononuclear cell
20
natural killer cell
19
foreskin keratinocyte
18
pancreatic beta cell
17
T-helper 2 cell
17
pancreatic alpha cell
17
pancreatic ductal cell
17
trophoblast cell
16
CD14-positive monocyte
16
osteoblast
16
skeletal muscle myoblast
15
fibroblast of lung
15
foreskin fibroblast
15
neutrophil
15
pancreatic delta cell
14
CD4-positive, alpha-beta T cell
14
astrocyte
14
keratinocyte
14
naive thymus-derived CD4-positive, alpha-beta T cell
14
pancreatic acinar cell
14
smooth muscle cell
13
neurosphere
13
pericyte cell
12
bronchial epithelial cell
12
excitatory neuron
12
mammary epithelial cell
12
mammary gland epithelial cell
12
skeletal muscle satellite cell
11
fibroblast of cardiac tissue
11
fibroblast of dermis
11
glomerular visceral epithelial cell
10
erythroblast
10
kidney tubule cell
10
retinal pigment epithelial cell
9
hepatic stellate cell
9
mature neutrophil
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
skeletal muscle fiber
8
epithelial cell of prostate
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of villous mesenchyme
8
kidney glomerular epithelial cell
8
memory B cell
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
8
renal cortical epithelial cell
8
skin fibroblast
7
CD1c-positive myeloid dendritic cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
mesenchymal stem cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cardiac muscle cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
gamma-delta T cell
6
glutamatergic neuron
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
type I muscle cell
6
type II muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
inflammatory macrophage
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
luminal epithelial cell of mammary gland
5
mast cell
5
myofibroblast cell
5
non-pigmented ciliary epithelial cell
5
plasma cell
5
tracheal epithelial cell
5
type II pneumocyte
4
T-cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
astrocyte of the spinal cord
4
basal cell
4
cortical cell of adrenal gland
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
stromal cell of bone marrow
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
cardiac fibroblast
3
colon epithelial cell
3
epidermal melanocyte
3
epithelial cell of amnion
Organ
3
epithelium
Date released
2
November, 2021
1
February, 2024
Software used
2
macs
abc
1
deltasvm
Lab
3
Bing Ren, UCSD
Project
2
ENCODE
1
AMP
RFA
2
ENCODE3
1
AMP
biosample_term_name!
regulatory T cell
organ_slims!
vasculature
software_used.software.name!
abc
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR340ZSY
released
Annotation file set
: Accessible chromatin annotation of Mesothelial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR287GAP
released
Annotation file set
: Accessible chromatin annotation of Fetal Mesothelial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR198EFG
released
Annotation file set
: Variant allelic effects annotation of Mesothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP