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Schema
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Annotation type
1
accessible chromatin
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
RNA-seq
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
1
tsv
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
1
primary cell
1
tissue
Biosample term
1611
whole blood
82
monocyte
58
heart
54
stomach
47
brain
45
endothelial cell
45
kidney
44
A549
44
muscle of arm
42
adrenal gland
40
placenta
40
small intestine
39
B cell
39
lung
38
common myeloid progenitor, CD34-positive
37
HeLa-S3
37
T cell
37
muscle of back
36
muscle of leg
32
large intestine
32
thymus
31
H1-hESC
31
fibroblast
30
CD8-positive, alpha-beta T cell
30
islet of Langerhans
30
neural progenitor cell
29
macrophage
29
smooth muscle cell
27
adipocyte
26
left lung
26
liver
26
natural killer cell
26
renal cortex interstitium
26
retina
26
right lung
25
cardiac muscle cell
25
renal pelvis
24
K562
23
right kidney
22
hematopoietic multipotent progenitor cell
21
heart left ventricle
21
hepatocyte
21
spinal cord
20
coronary artery
19
pancreatic ductal cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
17
CD14-positive monocyte
17
adipose tissue
16
T-helper 1 cell
16
foreskin keratinocyte
16
spleen
15
body of pancreas
15
endothelial cell of umbilical vein
15
keratinocyte
15
ovary
15
pancreas
15
pancreatic acinar cell
15
tibial nerve
14
MCF-7
14
dendritic cell
fibroblast of lung
14
pigmented layer of retina
14
psoas muscle
14
regulatory T cell
14
sigmoid colon
14
subcutaneous adipose tissue
13
T-helper 17 cell
13
heart right ventricle
13
induced pluripotent stem cell
13
pancreatic delta cell
13
pericyte
13
pericyte cell
12
CD8-positive, alpha-beta memory T cell
12
GM12878
12
ascending aorta
12
astrocyte
12
cerebellum
12
glomerular endothelial cell
12
mononuclear cell
12
osteoblast
12
pancreatic alpha cell
11
epithelial cell of proximal tubule
11
hepatic stellate cell
11
tibial artery
10
CD4-positive, alpha-beta T cell
10
EndoC_BH1
10
H9
10
HepG2
10
caudate nucleus
10
chorionic villus
10
embryonic stem cell
10
endothelial cell of hepatic sinusoid
10
esophagus squamous epithelium
10
foreskin fibroblast
10
lymphoblastoid cell line
10
mammary epithelial cell
10
testis
9
22Rv1
9
Ammon's horn
9
Peyer's patch
9
T-helper 2 cell
9
breast cancer cell
9
diffuse intrinsic pontine glioma
9
fibroblast of cardiac tissue
9
frontal cortex
9
gastrocnemius medialis
9
glomerular visceral epithelial cell
9
left cardiac atrium
9
mesenchymal stem cell
9
prostate gland
9
right atrium auricular region
9
skeletal muscle tissue
9
thyroid gland
8
Rhabdomyosarcoma
8
bronchial epithelial cell
8
endocardial cell
8
endodermal cell
8
esophagus muscularis mucosa
8
excitatory neuron
8
fibroblast cell line
8
gastric cancer cell
8
layer of hippocampus
8
mast cell
8
muscle of trunk
8
neuron
8
neuronal stem cell
8
neurosphere
8
omental fat pad
8
pituitary stalk
8
skin fibroblast
8
trophoblast cell
7
SK-N-MC
7
SK-N-SH
7
chorion membrane
7
colonic mucosa
7
endocrine pancreas
7
erythroblast
7
esophagus
7
kidney glomerular epithelial cell
7
liposarcoma
7
neutrophil
7
pancreatic beta cell
7
retinal pigment epithelial cell
7
right renal pelvis
7
skeletal muscle satellite cell
7
tongue
7
trophoblast
7
upper lobe of left lung
6
HFFc6
6
KARPAS-422 cell
6
PC-9
6
SJSA1
6
WI38
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
choroid plexus epithelial cell
6
colon epithelial cell
6
duodenal mucosa
6
epithelial cell of prostate
6
left renal cortex interstitium
6
limb
6
mesendoderm
6
mesodermal cell
6
midbrain
6
middle frontal gyrus
6
naive T cell
6
occipital lobe
6
putamen
6
skeletal muscle myoblast
6
smooth muscle cell of the coronary artery
6
substantia nigra
6
transverse colon
6
urinary bladder
5
A172
5
AG04449 cell
5
B-lymphoblastoid cell line
5
GM12864
5
HCT116
5
HT-29
5
IMR-90
5
LNCaP clone FGC
5
Non-Classical Monocyte
5
SGBS preadipocytes
5
acinar cell
5
acute myeloid leukemia
5
breast epithelium
5
cardiomyocytes
5
cardiomyocytes (cardiac muscle cell)
5
dermis blood vessel endothelial cell
5
dermis lymphatic vessel endothelial cell
5
enterocyte
5
extended pluripotent stem (EPS) cells
5
fibroblast of dermis
5
fibroblast of pulmonary artery
5
foreskin melanocyte
5
immortal human breast epithelial cell line cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
kidney tubule cell
5
lower leg skin
Organ
2
kidney
Life stage
1
fetal
Date released
1
February, 2020
1
November, 2021
Software used
1
macs
1
r
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
1
AMP
1
ENCODE
Collection Tags
1
AMP
1
ENCODE
1
T2DKP
RFA
1
AMP
1
ENCODE3
biosample_term_name!
fibroblast of lung
Showing 2 of 2 results
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Download
FileSet
DSR741VJV
released
Annotation file set
: Accessible chromatin annotation of Fetal Metanephric Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR139SLO
released
Annotation file set
: Gene expression levels of Kidney metanephros from RNA-seq (ENCODE) fetal
Lab:
AMP-T2D consortium
Project:
AMP