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Schema
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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
tissue
Biosample term
135
monocyte
93
fibroblast
90
endothelial cell
76
A549
74
macrophage
73
CD8-positive, alpha-beta T cell
70
smooth muscle cell
68
HeLa-S3
68
T-cell
66
B cell
66
common myeloid progenitor, CD34-positive
64
CD4-positive, alpha-beta T cell
55
hematopoietic multipotent progenitor cell
55
stimulated activated CD4-positive, alpha-beta T cell
54
H1-hESC
52
hepatocyte
52
neural progenitor cell
51
natural killer cell
48
K562
46
adipocyte
45
T cell
39
CD14-positive monocyte
38
cardiac muscle cell
37
CD4-positive, alpha-beta memory T cell
34
pericyte
33
MCF-7
33
activated CD4-positive, alpha-beta T cell
33
keratinocyte
32
T-helper 1 cell
32
glutamatergic neuron
31
astrocyte
29
naive thymus-derived CD4-positive, alpha-beta T cell
29
pancreatic ductal cell
28
T-helper 17 cell
28
regulatory T cell
28
trophoblast cell
27
stimulated activated CD8-positive, alpha-beta memory T cell
26
CD8-positive, alpha-beta memory T cell
26
T-helper 2 cell
26
epithelial cell of proximal tubule
26
neuron
24
dendritic cell
24
endothelial cell of lymphatic vessel
24
foreskin keratinocyte
24
pericyte cell
23
EndoC_BH1
23
H9
23
foreskin fibroblast
22
GABAergic neuron
22
HCT116
22
endothelial cell of umbilical vein
22
glomerular endothelial cell
22
naive thymus-derived CD8-positive, alpha-beta T cell
20
breast cancer cell
20
mesenchymal stem cell
20
mononuclear cell
19
HFFc6
19
HepG2
19
endocardial cell
19
hepatic stellate cell
19
retinal pigment epithelial cell
18
embryonic stem cell
18
mast cell
18
osteoblast
18
pancreatic beta cell
17
erythroblast
17
fibroblast of lung
17
pancreatic alpha cell
17
skeletal muscle myoblast
16
GM12878
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
induced pluripotent stem cell
16
pancreatic acinar cell
16
skeletal muscle satellite cell
15
activated T-cell
15
bronchial epithelial cell
15
mammary epithelial cell
15
mammary gland epithelial cell
15
neutrophil
15
pancreatic delta cell
14
activated CD8-positive, alpha-beta memory T cell
14
thyroid follicular cell
13
dermis blood vessel endothelial cell
13
excitatory neuron
13
fibroblast of dermis
13
glomerular visceral epithelial cell
13
naive B cell
13
neuronal stem cell
13
neurosphere
12
SK-N-DZ
12
epithelial cell of prostate
12
lymphoblastoid cell line
12
neuroblastoma cell
11
IMR-90
11
SK-N-SH
11
choroid plexus epithelial cell
11
kidney tubule cell
11
progenitor cell
11
progenitor cell of endocrine pancreas
10
22Rv1
10
Rhabdomyosarcoma
10
endodermal cell
10
foreskin melanocyte
10
gastric cancer cell
10
inflammatory macrophage
10
lymphocyte
10
mesothelial cell
10
skin fibroblast
9
B Cell
9
GM06990
9
HAP-1
9
HT-29
9
PC-9
9
SK-N-MC
9
WERI-Rb-1
9
WI38
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
megakaryocyte
9
memory B cell
9
oligodendrocyte
9
type B pancreatic cell
8
B-lymphoblastoid cell line
8
CD1c-positive myeloid dendritic cell
8
CMK
8
GM12864
8
GM12865
8
HEK293
8
LNCaP clone FGC
8
MM.1S
8
NAMALWA cell
8
OCI-LY7
8
T47D
8
colon epithelial cell
8
epithelial cell of esophagus
8
fibroblast cell line
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
immortal human breast epithelial cell line cell
8
kidney glomerular epithelial cell
8
mesendoderm
8
mesodermal cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
renal cortical epithelial cell
8
skeletal muscle fiber
7
A673
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD4-positive helper T cell
7
CD4-positive, CD25-positive, alpha-beta regulatory T cell
7
GM03348
7
GM19240
7
HL-60
7
MG63
7
SJCRH30
7
SW480
7
cardiac fibroblast
7
cardiomyocytes (cardiac muscle cell)
7
cell of skeletal muscle
7
cholangiocyte
7
dermis lymphatic vessel endothelial cell
7
effector memory CD8-positive, alpha-beta T cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of mammary gland
7
leukocyte
7
mature neutrophil
7
medium spiny neuron
7
muscle precursor cell
7
neural cell
7
oligodendrocyte precursor cell
7
pancreatic A cell
6
A172
6
ACHN
6
Caco-2 cell
6
Chondroid Chordoma
6
GM04503
6
GM12892
6
GM19238
6
GM19239
6
GM23248
6
HUES8
6
Jurkat
6
KARPAS-422 cell
6
LHCN-M2
6
LNCAP
6
LoVo cell
6
SJSA1
6
Schwann cell
6
adrenal gland glandular cell
Organ
1
kidney
Date released
1
November, 2021
Software used
1
macs
Lab
1
Bing Ren, UCSD
Project
1
ENCODE
Collection Tags
1
AMP
1
T2DKP
RFA
1
ENCODE3
biosample_type!
tissue
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Download
FileSet
DSR741VJV
released
Annotation file set
: Accessible chromatin annotation of Fetal Metanephric Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE