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Citing CMDGA
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Annotation type
1
Fine-mapped variants
1
target gene predictions
Annotation Category
1
Genetic variant effects
1
Target gene links
Annotation type Category
1
RNA-seq
1
snATAC-seq
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
1
primary cell
1
tissue
Biosample term
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
amygdala
1
anterior cingulate cortex
1
ascending aorta
1
body of pancreas
1
caudate nucleus
1
cell
1
cerebellum
1
cerebellum (Hemisphere)
1
conventional dendritic cell
1
coronary artery
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
endothelial cell
1
frontal cortex
1
gastrocnemius medialis(Muscle - Skeletal)
1
hypothalamus
1
left ventricle myocardium
1
macrophage
1
megakaryocyte
1
memory B cell
1
monocyte
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
natural killer cell mediated cytotoxicity
1
non-classical monocyte
1
nucleus accumbens
1
omental fat pad
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
plasmacytoid dendritic cell
1
putamen
1
regulatory T cell
1
right atrium auricular region
1
right lobe of liver
1
stellate neuron
1
subcutaneous adipose tissue
1
substantia nigra
1
tibial artery
1
tibial nerve
Organ
1
heart
Life stage
1
adult
Date released
1
January, 2021
1
March, 2020
Software used
108
macs
21
r
5
limix
4
qTLtools
2
chromhmm
2
deltasvm
1
abc
1
chicago
1
cicero
1
encode-ccres
1
gtex_eqtl:V8
1
gtex_finemapping_eQTL:caveman
1
gtex_finemapping_eQTL:caviar
1
gtex_finemapping_eQTL:dapg
1
minfi
1
sqtlseeker
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
1
AMP
1
T1D
RFA
1
AMP
1
T1D
Showing 2 of 2 results
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Download
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR947OJV
released
Annotation file set
: Fine-mapping results from CaVEMaN of right atrium auricular region for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP