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Citing CMDGA
Clear Filters
Annotation type
2
hQTL
1
eQTL
1
gene expression
1
meQTL
1
sQTL
Annotation Category
5
Genetic variant effects
1
Gene expression levels
Annotation type Category
2
ChIP-seq
2
RNA-seq
1
DNA methylation profiling by array assay
1
snRNA-seq
Available data
2
bed bed3+
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
5
monocyte
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neutrophil
2
skeletal muscle fiber
1
adipocyte
1
endothelial cell
1
glial cell
1
leukocyte
1
mesenchymal stem cell
1
neural cell
1
skeletal muscle satellite cell
1
smooth muscle cell
1
type I muscle cell
1
type II muscle cell
Life stage
5
adult
Date released
5
May, 2021
1
February, 2024
Software used
114
macs
16
r
6
abc
5
limix
4
qTLtools
2
deltasvm
1
chicago
1
cicero
1
deeptools
1
eigenmt
1
minfi
1
rasqual
1
samtools
1
sqtlseeker
1
umitools
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
Showing 6 of 6 results
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Download
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR301CXZ
released
Annotation file set
: methylation quantitative trait loci (meQTLs) from DAN methylation of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 196 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR650UBZ
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K4me1 ChIP-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR930EID
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K27ac ChIP-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR693IVW
released
Annotation file set
: expression quantitative trait loci (eQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR873DHZ
released
Annotation file set
: Cell type gene expression mean TPM and bw of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP