Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
2
candidate regulatory elements
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
2
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
30
large intestine
15
foreskin fibroblast
14
foreskin keratinocyte
13
sigmoid colon
11
transverse colon
7
colon epithelial cell
7
foreskin melanocyte
6
HT-29
6
colonic mucosa
5
SW480
5
mucosa of rectum
4
HCT-116 cell
4
HCT116
4
RKO
4
muscle layer of colon
2
EH
2
EL
2
ELR
2
rectum smooth muscle tissue
2
skin of prepuce of penis
1
Caco-2
1
LoVo
1
colon
1
colon sigmoid
1
rectal smooth muscle tissue
Organ
5
intestine
5
large intestine
0
penis
Life stage
4
adult
Date released
2
February, 2021
2
September, 2022
1
August, 2017
Software used
r
3
chromhmm
2
encode-ccres
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP
organ_slims!
pituitary gland
software_used.software.name!
r
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR180ELA
released
Annotation file set
: Chromatin states for BSS01283 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR346ASL
released
Annotation file set
: Chromatin states for BSS01282 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024EBX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mucosa of rectum
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR719BGJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mucosa of rectum
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR362251
released
Annotation file set
: ChromHMM 13-state model for Rectal mucosa
Lab:
Stephen Parker, UMich
Project:
AMP