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Clear Filters
Annotation type
  • 4candidate regulatory elements
  • 2chromatin state
  • 2target gene predictions
Annotation Category
  • 6cis-regulatory elements
  • 2Target gene links
Annotation type Category
  • 8ChIP-seq
  • 6DNase-seq
Available data
  • 6bed bed3+
  • 2bed bed9
File set status
  • 8released
Genome assembly (visualization)
  • 8hg19
  • 2GRCh38
Organism
  • 8Homo sapiens
Biosample type
  • 8tissue
Biosample term
  • 63small intestine
  • 56large intestine
  • 23sigmoid colon
  • 19transverse colon
  • 14Peyer's patch
  • 10colonic mucosa
  • 9colon epithelial cell
  • 9duodenal mucosa
  • 9mucosa of rectum
  • 8HT-29
  • 8muscle layer of colon
  • 8muscle layer of duodenum
  • 7SW480
  • 6HCT116
  • 6enterocyte
  • 4HCT-116 cell
  • 4RKO
  • 4enteric smooth muscle cell
  • 4rectum smooth muscle tissue
  • 2enterocyte of epithelium of small intestine
  • 2paneth cell
  • 2small intestine goblet cell
  • 1Caco-2
  • 1Crypt of Lieberkuhn
  • 1LoVo
  • 1colon
  • 1colon - sigmoid
  • 1colon - transverse
  • 1colon sigmoid
  • 1crypt of Lieberkuhn
  • 1intestinal epithelial cell
  • 1intestinal epithelium
  • 1rectal smooth muscle tissue
  • 1small intestine - terminal Ileum
Organ
  • 8intestine
  • 8small intestine
Life stage
  • 8adult
Date released
  • 6September, 2022
  • 2February, 2021
Software used
  • 4r
  • 2chromhmm
  • 2encode-ccres
Lab
  • 8AMP-T2D consortium
Project
  • 8AMP
Collection Tags
  • 6EpiMap
  • 2ENCODE
RFA
  • 8AMP

Showing 8 of 8 results

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  • FileSet

    DSR206MEO

    released

    Annotation file set: Candidate regulatory elements for BSS01288 muscle layer of duodenum from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR541INO

    released

    Annotation file set: Candidate regulatory elements for BSS01287 muscle layer of duodenum from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR042YBO

    released

    Annotation file set: Target gene predictions for BSS01288 muscle layer of duodenum from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR121CKW

    released

    Annotation file set: Target gene predictions for BSS01287 muscle layer of duodenum from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR400CZG

    released

    Annotation file set: Chromatin states for BSS01288 using the 18-state Roadmap model from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR480OFQ

    released

    Annotation file set: Chromatin states for BSS01287 using the 18-state Roadmap model from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR446KEC

    released

    Annotation file set: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE muscle layer of duodenum
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR546ZRW

    released

    Annotation file set: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE muscle layer of duodenum
    Lab: AMP-T2D consortium
    Project: AMP
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