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Schema
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Annotation type
1
candidate regulatory elements
1
representative DNase hypersensitivity sites
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
DNase-seq
1
ChIP-seq
Available data
2
bed bed3+
1
tsv
File set status
3
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
55
hematopoietic multipotent progenitor cell
47
neural progenitor cell
24
adipocyte
14
embryonic stem cell
12
mesenchymal stem cell
11
cardiomyocytes
10
endodermal cell
10
progenitor cell of endocrine pancreas
9
cardiac muscle cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
mesendoderm
9
neuronal stem cell
8
T-cell acute lymphoblastic leukemia
8
cardiomyocytes (cardiac muscle cell)
8
mesodermal cell
8
neuroblastoma cell line
7
bipolar neuron
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
dendritic cell
6
muscle cell
6
retinal pigment epithelial cell
6
trophoblast cell
5
SGBS preadipocytes
5
hepatocyte
5
islet precursor cell
5
neural cell
5
smooth muscle cell
4
B cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
adipose-derived stem cell
4
colon adenocarcinoma
4
ectodermal cell
4
neuron
4
olfactory neurosphere cell line
4
rhabdomyosarcoma cell
3
cardiac mesoderm primordium
3
cardiac myoblast
3
cardiovascular progenitor cell
3
esophageal adenocarcinoma
3
foreskin keratinocyte
3
foreskin melanocyte
3
hepatocyte(AFP)
3
iPS DF 4.7 Cell Line
3
mammary gland epithelial cell
3
myocyte
3
myotube
3
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
2
BICR 31
2
CD4-positive helper T cell
2
CD8-Positive T-Lymphocytes
2
EAhy 926 cell
2
T-lymphoma cell line
2
Th1 cell
2
atypical teratoid rhabdoid tumor
2
brain
2
chronic myelomonocytic leukemia
2
colorectal adenocarcinoma
2
dermis microvascular lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
diffuse intrinsic pontine glioma
2
diffuse large B-cell lymphoma
2
ecto neural progenitor cell
2
endometrial stromal cell
2
endometrial stromal tumor
2
endometriosis
2
endothelial cell
2
epidermal stem cell
2
erythroid progenitor cell
2
excitatory neuron
2
fibroblast
2
hippocampal neuron
2
lower motor neuron
2
lymphocyte of B lineage (iPSC)
2
medulloblastoma cell line
2
mesothelial cell of epicardium
2
natural killer cell
2
neuroepithelial stem cell
2
osteosarcoma
1
Adipose SGBS cell line (adipocyte)
1
Barrett's epithelial cell line
1
CD8-positive, alpha-beta T cell
1
Chondroid Chordoma
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
Uveal Melanoma
1
astrocyte
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiac precursors
1
chondroblastoma
1
chronic lymphocytic leukemia
1
colon carcinoma
1
colonic adenoma cell
1
colorectal cancer
1
colorectal carcinoma
1
embryonic fibroblast
1
endometrioid carcinoma
1
ependymoma
1
erythroid cell
1
fibroblast-like synoviocyte
1
glutamatergic neuron
1
hESC cell
1
head and neck squamous cell carcinoma BICR 16
1
head and neck squamous cell carcinoma BICR 6
1
hematopoietic stem cell
1
hepatocellular carcinoma
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
lymphoid progenitor cell
1
melanoma cell line
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
mid-neurogenesis radial glial cells
1
nephron progenitor cell
1
neural crest cell
1
neuron cell of Hypothalamus (neuron)
1
osteocyte
1
radial glial cell
1
renal cell carcinoma
1
secretory cell
1
skeletal muscle myoblast
1
skin fibroblast
1
stem cell
1
type B pancreatic cell
1
white adipose cell
Organ
1
muscle organ
Life stage
1
adult
Date released
2
February, 2021
1
July, 2026
Software used
1
altius-index
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
Collection Tags
2
ENCODE
1
ENCODE-rE2G
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR418388
released
Annotation file set
: Target gene predictions for myocyte (CL:0000187) derived from ENCODE-rE2G (ENCSR264JNJ).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR585NDN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE myocyte
Lab:
AMP-T2D consortium
Project:
AMP