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Schema
Citing CMDGA
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Annotation type
1
candidate regulatory elements
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
primary cell
2
in vitro differentiated cells
Biosample term
67
muscle of arm
58
muscle of leg
54
muscle of back
33
islet of Langerhans
22
pancreas
20
psoas muscle
18
body of pancreas
18
gastrocnemius medialis
17
muscle of trunk
15
endocrine pancreas
15
skeletal muscle tissue
12
EndoC_BH1
11
esophagus muscularis mucosa
9
stomach smooth muscle
7
LHCN-M2
7
gastroesophageal sphincter
5
A673
5
Panc1
5
SJCRH30
4
rectum smooth muscle tissue
3
8988T
3
HPDE6-E6E7
3
pancreatic ductal cell
2
hindlimb muscle
2
muscle of leg
2
forelimb muscle
2
myotube
2
pancreatic acinar cell
2
pancreatic stellate cell
2
respiratory system smooth muscle
1
hindlimb muscle
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
rectal smooth muscle tissue
1
skeletal muscle
1
smooth muscle tissue
1
type B pancreatic cell
Organ
2
musculature of body
0
pancreas
Life stage
1
unknown
Date released
1
February, 2021
1
May, 2021
Software used
1
abc
1
encode-ccres
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
2
AMP
RFA
2
AMP
biosample_type!
primary cell
files.file_type!
tsv
Showing 2 of 2 results
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Download
FileSet
DSR706TCC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE myotube
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR594LRQ
released
Annotation file set
: enhancer-gene predicton of myotube_originated_from_skeletal_muscle_myoblast-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP