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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
candidate regulatory elements
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Biosample term
73
brain
67
muscle of arm
58
muscle of leg
54
muscle of back
22
caudate nucleus
20
psoas muscle
18
gastrocnemius medialis
18
substantia nigra
17
muscle of trunk
16
cerebellum
16
frontal cortex
16
layer of hippocampus
16
skeletal muscle tissue
15
putamen
14
temporal lobe
13
skeletal muscle satellite cell
12
Ammon's horn
11
breast epithelium
11
esophagus muscularis mucosa
10
SK-N-DZ
10
SK-N-SH
10
angular gyrus
10
choroid plexus epithelial cell
10
pituitary stalk
9
cingulate gyrus
9
skeletal muscle fiber
9
stomach smooth muscle
8
SK-N-MC
8
globus pallidus
8
midbrain
7
BE(2)-C
7
LHCN-M2
7
amygdala
7
gastroesophageal sphincter
7
hypothalamus
7
nucleus accumbens
7
type I muscle cell
7
type II muscle cell
6
Brodmann (1909) area 46
6
Daoy
6
anterior cingulate cortex
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cerebellum (Hemisphere)
6
medulla oblongata
6
middle frontal gyrus
6
pons
6
skeletal muscle cell
5
cardiac fibroblast
5
A172
5
A673
5
M059J
5
SJCRH30
5
brain microvascular endothelial cell
5
cerebellar cortex
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
myotube
4
H54
4
U-87 MG
4
brain pericyte
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
inferior parietal cortex
4
medulloblastoma
4
rectum smooth muscle tissue
3
dorsolateral prefrontal cortex
3
prefrontal cortex
2
hindlimb muscle
2
muscle of leg
2
cardiac muscle myoblast
2
forelimb muscle
2
hippocampal neuron
2
middle frontal area 46
2
pituitary gland
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
anterior parahippocampal gyrus
1
aortic smooth muscle cell
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
breast
1
breast - mammary tissue
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
frontal pole
1
hindlimb muscle
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
septal nuclear complex
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
5
musculature of body
0
brain
0
breast
Life stage
1
unknown
Date released
3
February, 2021
1
May, 2021
1
October, 2022
Software used
2
macs
1
abc
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR198EWK
released
Annotation file set
: Binding sites annotation for myotube (HSMMtube) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR706TCC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE myotube
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR745RPS
released
Annotation file set
: Histone modifications annotation for Muscle Myotube from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR122YGR
released
Annotation file set
: Binding sites annotation for Muscle Myotube from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR594LRQ
released
Annotation file set
: enhancer-gene predicton of myotube_originated_from_skeletal_muscle_myoblast-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP