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Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
candidate regulatory elements
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
Biosample term
60
HeLa-S3
51
muscle of arm
43
muscle of leg
41
muscle of back
16
psoas muscle
14
gastrocnemius medialis
13
muscle of trunk
13
skeletal muscle tissue
11
skeletal muscle satellite cell
9
esophagus muscularis mucosa
9
skeletal muscle fiber
8
uterus
7
type I muscle cell
7
type II muscle cell
6
LHCN-M2
6
gastroesophageal sphincter
6
stomach smooth muscle
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
skeletal muscle cell
4
A673
4
Ishikawa
4
SJCRH30
4
myotube
2
hindlimb muscle
2
muscle of leg
2
cardiac muscle myoblast
2
endometrium cancer
2
forelimb muscle
2
rectum smooth muscle tissue
2
respiratory system smooth muscle
2
somatic muscle myotube
2
uterine smooth muscle cell
1
aortic smooth muscle cell
1
cervix - ectocervix
1
endometrium
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
hindlimb muscle
1
rectal smooth muscle tissue
1
skeletal muscle
1
smooth muscle tissue
Organ
4
musculature of body
0
uterus
Life stage
1
unknown
Date released
3
February, 2021
1
May, 2021
Software used
2
macs
1
abc
chromhmm
1
encode-ccres
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
software_used.software.name!
chromhmm
Showing 4 of 4 results
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Download
FileSet
DSR706TCC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE myotube
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR745RPS
released
Annotation file set
: Histone modifications annotation for Muscle Myotube from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR122YGR
released
Annotation file set
: Binding sites annotation for Muscle Myotube from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR594LRQ
released
Annotation file set
: enhancer-gene predicton of myotube_originated_from_skeletal_muscle_myoblast-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP