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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
2
ATAC-seq
2
snATAC-seq
Available data
5
bed bed3+
3
bigWig
1
tsv
0
bigBed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
3
Homo sapiens
Biosample type
5
primary cell
Biosample term
109
monocyte
46
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
33
B cell
33
endothelial cell
30
fibroblast
27
CD14-positive monocyte
23
CD4-positive, alpha-beta memory T cell
23
pericyte cell
22
macrophage
21
smooth muscle cell
20
hepatocyte
18
natural killer cell
17
endothelial cell of umbilical vein
16
T cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
astrocyte
15
foreskin fibroblast
15
foreskin keratinocyte
15
keratinocyte
14
mononuclear cell
14
osteoblast
14
trophoblast cell
13
fibroblast of lung
13
mammary epithelial cell
12
CD4-positive, alpha-beta T cell
12
T-helper 1 cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
pancreatic beta cell
12
pancreatic ductal cell
12
skeletal muscle myoblast
11
pancreatic alpha cell
10
T-helper 17 cell
10
T-helper 2 cell
10
bronchial epithelial cell
10
mammary gland epithelial cell
10
neurosphere
10
pancreatic delta cell
10
skeletal muscle satellite cell
9
erythroblast
9
fibroblast of cardiac tissue
9
fibroblast of dermis
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
pancreatic acinar cell
9
retinal pigment epithelial cell
8
dermis blood vessel endothelial cell
8
glutamatergic neuron
8
mast cell
7
cardiac muscle cell
7
endothelial cell of lymphatic vessel
7
epithelial cell of prostate
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
hepatic stellate cell
7
kidney tubule cell
7
skeletal muscle fiber
7
skin fibroblast
7
type II pneumocyte
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
epithelial cell of proximal tubule
6
fibroblast of breast
6
luminal epithelial cell of mammary gland
6
memory B cell
6
mesenchymal stem cell
6
myoepithelial cell of mammary gland
6
myofibroblast cell
6
naive T cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
CD4-positive helper T cell
5
adipocyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
endocardial cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
gabaergic neuron
5
glomerular endothelial cell
5
glomerular visceral epithelial cell
5
inhibitory neuron
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
plasma cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
enteric smooth muscle cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
iris pigment epithelial cell
4
lung microvascular endothelial cell
4
megakaryocyte
4
mesothelial cell
4
neuronal stem cell
4
non-pigmented ciliary epithelial cell
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
astrocyte of the spinal cord
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
club cell
3
enteric neuron
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the conjunctiva
3
goblet cell
3
kidney capillary endothelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
schwann cell
3
stromal cell of bone marrow
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
T follicular helper cell
2
Th2 cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
cholangiocyte
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythrocyte
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
leukemic stem cell
2
leukocyte
Date released
3
May, 2020
2
January, 2021
Software used
1
chicago
1
cicero
1
macs
Lab
3
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Project
3
AMP
2
T1D
RFA
3
AMP
2
T1D
Showing 5 of 5 results
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Download
FileSet
DSR430JXD
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of naive_B
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR878UFU
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of naive_B
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR279CYO
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of naive B cel
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR098REC
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal naive B cel
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR841RLU
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated naive B cel
Lab:
AMP-T2D consortium
Project:
AMP