Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
3
target gene predictions
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
snATAC-seq
2
ATAC-seq
1
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
4
bigWig
4
tsv
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
7
Homo sapiens
Biosample type
8
primary cell
2
in vitro differentiated cells
2
tissue
Biosample term
28
CD8-positive, alpha-beta T cell
28
endothelial cell
25
fibroblast
23
monocyte
21
pericyte cell
18
CD14-positive monocyte
18
macrophage
18
smooth muscle cell
17
CD4-positive, alpha-beta memory T cell
15
astrocyte
15
endothelial cell of umbilical vein
15
foreskin fibroblast
15
foreskin keratinocyte
15
keratinocyte
14
hepatocyte
14
trophoblast cell
13
B cell
13
osteoblast
12
excitatory neuron
12
pancreatic ductal cell
11
common myeloid progenitor, CD34-positive
11
mammary epithelial cell
11
regulatory T cell
10
T-helper 17 cell
10
bronchial epithelial cell
10
neurosphere
9
T cell
9
erythroblast
9
fibroblast of lung
9
pancreatic acinar cell
9
retinal pigment epithelial cell
9
skeletal muscle myoblast
8
pancreatic beta cell
7
CD4-positive, alpha-beta T cell
7
cardiac muscle cell
7
epithelial cell of prostate
7
fibroblast of cardiac tissue
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
neutrophil
7
pancreatic alpha cell
7
pancreatic delta cell
7
skeletal muscle fiber
7
skin fibroblast
7
type II pneumocyte
6
CD1c-positive myeloid dendritic cell
6
T-helper 1 cell
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
epithelial cell of proximal tubule
6
fibroblast of dermis
6
mammary gland epithelial cell
6
memory B cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
natural killer cell
6
olfactory receptor cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
6
skeletal muscle satellite cell
6
type I muscle cell
6
type II muscle cell
5
CD4-positive helper T cell
5
CD8-positive, alpha-beta memory T cell
5
T-helper 2 cell
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
glomerular endothelial cell
5
inhibitory neuron
5
kidney epithelial cell
5
mast cell
5
myofibroblast cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
plasma cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
4
T-cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
gabaergic neuron
4
glomerular visceral epithelial cell
4
glutamatergic neuron
4
iris pigment epithelial cell
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
megakaryocyte
4
mesenchymal stem cell
4
mesothelial cell
4
mononuclear cell
4
non-pigmented ciliary epithelial cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
cardiac fibroblast
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
adipocyte
3
astrocyte of the spinal cord
3
bone marrow cell
3
brain pericyte
3
cardiac fibroblast
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the conjunctiva
3
goblet cell
3
hepatic stellate cell
3
kidney capillary endothelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive t cell
3
neoplastic cell
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
schwann cell
3
stromal cell of bone marrow
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
T follicular helper cell
2
Th2 cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of hepatic sinusoid
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
leukemic stem cell
2
leukocyte
2
luteal cell
2
mantle cell lymphoma cell
2
mature NK T cell
2
mature natural killer cell
2
mature neutrophil
2
melanocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
2
microglial cell
2
myoepithelial cell
Organ
2
connective tissue
2
pancreas
Life stage
adult
Date released
4
January, 2021
1
April, 2020
1
February, 2021
1
May, 2020
1
May, 2021
Software used
3
macs
2
cicero
1
abc
Lab
4
Kyle Gaulton, UCSD
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Xin Sun, UCSD
Project
4
T1D
3
AMP
1
LungMap
RFA
4
T1D
3
AMP
1
LungMap2
relevant_life_stage!
adult
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR382SMZ
released
Annotation file set
: ATAC-seq peaks in NK cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR486WIC
released
Annotation file set
: Histone modifications annotation for Blood Killer_Cells,_Natural from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR598LAB
released
Annotation file set
: enhancer-gene predicton of natural_killer_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR397SUR
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of adaptive_NK
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR457TFN
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of activated_stellate
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR197KBT
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of adaptive_NK
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR223BJV
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of activated_stellate
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR920YKW
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal natural killer cell
Lab:
AMP-T2D consortium
Project:
AMP