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Schema
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Annotation type
3
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
2636
whole blood
131
monocyte
90
heart
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
53
liver
52
left lung
51
CD8-positive, alpha-beta T cell
51
neural progenitor cell
48
thymus
47
B cell
45
right lung
44
islet of Langerhans
43
hematopoietic multipotent progenitor cell
42
right kidney
40
K562
40
endothelial cell
40
renal cortex interstitium
40
renal pelvis
40
retina
38
hepatocyte
38
macrophage
36
left kidney
35
fibroblast
35
spinal cord
34
heart left ventricle
34
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
28
regulatory T cell
26
MCF-7
26
natural killer cell
25
pancreatic ductal cell
25
subcutaneous adipose tissue
25
tibial nerve
24
body of pancreas
24
pericyte cell
23
EndoC_BH1
23
T-helper 1 cell
23
adipocyte
23
epithelial cell of proximal tubule
23
sigmoid colon
23
smooth muscle cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
foreskin keratinocyte
22
pancreas
21
T-helper 17 cell
21
caudate nucleus
21
glomerular endothelial cell
21
trophoblast cell
20
breast cancer cell
20
coronary artery
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
19
foreskin fibroblast
19
heart right ventricle
19
keratinocyte
19
right atrium auricular region
18
HFFc6
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
pancreatic beta cell
18
thyroid gland
18
tibial artery
18
transverse colon
17
T-helper 2 cell
17
astrocyte
17
cardiac muscle cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
pancreatic acinar cell
17
pancreatic alpha cell
17
substantia nigra
17
testis
16
HepG2
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
induced pluripotent stem cell
16
retinal pigment epithelial cell
16
skeletal muscle tissue
15
CD4-positive, alpha-beta T cell
15
GM12878
15
ascending aorta
15
cerebellum
15
fibroblast of lung
15
frontal cortex
15
layer of hippocampus
15
mammary gland epithelial cell
15
mesenchymal stem cell
15
neutrophil
15
pancreatic delta cell
15
skeletal muscle myoblast
14
H9
14
endocrine pancreas
14
prostate gland
14
putamen
14
upper lobe of left lung
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
12
Ammon's horn
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
12
temporal lobe
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
glomerular visceral epithelial cell
11
hepatic stellate cell
11
left cardiac atrium
11
left renal pelvis
11
mammary epithelial cell
11
right renal pelvis
11
skeletal muscle satellite cell
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
skin fibroblast
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
tongue
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mast cell
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
thoracic aorta
7
B-lymphoblastoid cell line
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
cingulate gyrus
7
colonic mucosa
7
dermis lymphatic vessel endothelial cell
7
duodenal mucosa
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
Life stage
5
embryonic
Date released
3
September, 2022
2
February, 2021
Software used
2
encode-ccres
2
r
1
chromhmm
Lab
5
AMP-T2D consortium
Stephen Parker, UMich
Project
5
AMP
Collection Tags
3
EpiMap
2
ENCODE
RFA
5
AMP
lab.title!
Stephen Parker, UMich
Showing 5 of 5 results
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Download
FileSet
DSR481YGC
released
Annotation file set
: Candidate regulatory elements for BSS01366 neural cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR174BSF
released
Annotation file set
: Target gene predictions for BSS01366 neural cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR628HIW
released
Annotation file set
: Chromatin states for BSS01366 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR770IYJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE neural cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR777CTL
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE neural cell
Lab:
AMP-T2D consortium
Project:
AMP