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Schema
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Annotation type
2
accessible chromatin
1
caQTL
1
gene expression
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
2
snATAC-seq
1
ATAC-seq
1
snRNA-seq
Available data
1
bed bed3
1
bed bed3+
1
bed narrowPeak
1
tsv
File set status
4
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
8
adipocyte
7
endothelial cell
7
smooth muscle cell
5
skeletal muscle satellite cell
4
mesenchymal stem cell
4
neural cell
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
3
fibro-adipogenic progenitor cell
3
macrophage
3
neuromuscular junction nucleus
3
type 1 muscle cell
3
type 2a muscle cell
3
type 2x muscle cell
2
ESC derived cell line
2
T cell
2
glial cell
2
leukocyte
1
CD34-PB
1
GM12878
1
H1-hESC
1
HepG2
1
K562
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
duodenal mucosa
1
endothelial cell of umbilical vein
1
fibroblast of lung
1
islet of Langerhans
1
keratinocyte
1
layer of hippocampus
1
liver
1
mammary epithelial cell
1
mid-frontal lobe
1
mucosa of rectum
1
rectum smooth muscle tissue
1
skeletal muscle
1
skeletal muscle myoblast
1
stomach smooth muscle
1
subcutaneous adipose tissue
1
substantia nigra
1
temporal lobe
Life stage
2
adult
Date released
2
February, 2024
2
July, 2025
Software used
2
macs
1
deeptools
1
qTLtools
1
r
1
samtools
1
umitools
Encyclopedia version
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
Lab
5
AMP-T2D consortium
4
Stephen Parker, UMich
Project
4
AMP
Collection Tags
2
T2DKP
2
DGA
RFA
4
AMP2
Showing 4 of 4 results
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Download
FileSet
DSR354XGE
released
Annotation file set
: Accessible chromatin annotation of each cell type cluster identified from snRNA+snATAC profiling of human skeletal muscle - neural cell
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR205DQB
released
Annotation file set
: caQTL results in each cell type cluster identified from snRNA+snATAC profiling of human skeletal muscle - neural cell
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR025YBG
released
Annotation file set
: Cell type chromatin broad peaks and bw of neural cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR811PAV
released
Annotation file set
: Cell type gene expression mean TPM and bw of neural cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP