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Schema
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Annotation type
3
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
2636
whole blood
131
monocyte
90
heart
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
liver
52
left lung
51
CD8-positive, alpha-beta T cell
51
neural progenitor cell
48
thymus
46
B cell
45
right lung
44
islet of Langerhans
43
hematopoietic multipotent progenitor cell
42
right kidney
40
renal cortex interstitium
40
renal pelvis
40
retina
38
endothelial cell
36
left kidney
35
macrophage
35
spinal cord
34
heart left ventricle
34
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
28
fibroblast
27
hepatocyte
26
MCF-7
26
natural killer cell
25
K562
25
subcutaneous adipose tissue
25
tibial nerve
24
adipocyte
24
body of pancreas
24
pericyte cell
23
EndoC_BH1
23
epithelial cell of proximal tubule
23
regulatory T cell
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
foreskin keratinocyte
22
pancreas
22
smooth muscle cell
21
glomerular endothelial cell
20
T cell
20
breast cancer cell
20
coronary artery
20
keratinocyte
20
mononuclear cell
20
ovary
20
psoas muscle
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart right ventricle
19
pigmented layer of retina
19
right atrium auricular region
18
T-helper 1 cell
18
embryonic stem cell
18
gastrocnemius medialis
18
pancreatic ductal cell
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
H1-hESC
17
HepG2
17
T-helper 17 cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
testis
16
T-helper 2 cell
16
cardiac muscle cell
16
chorionic villus
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
mesenchymal stem cell
16
pancreatic alpha cell
16
pancreatic beta cell
16
retinal pigment epithelial cell
16
skeletal muscle myoblast
16
skeletal muscle tissue
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
ascending aorta
15
astrocyte
15
cerebellum
15
frontal cortex
15
neutrophil
14
endocrine pancreas
14
mammary gland epithelial cell
14
pancreatic acinar cell
14
prostate gland
14
putamen
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
neurosphere
13
pancreatic delta cell
13
temporal lobe
12
Ammon's horn
12
HeLa-S3
12
excitatory neuron
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
neuronal stem cell
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
glomerular visceral epithelial cell
11
hepatic stellate cell
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
11
skeletal muscle satellite cell
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
10
trophoblast
9
GM12878
9
H9
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mast cell
7
mature neutrophil
7
renal cortical epithelial cell
7
right lobe of liver
7
stomach smooth muscle
Life stage
5
embryonic
Date released
3
September, 2022
2
February, 2021
February, 2024
Software used
2
encode-ccres
2
r
1
chromhmm
Lab
5
AMP-T2D consortium
Project
5
AMP
Collection Tags
3
EpiMap
2
ENCODE
RFA
5
AMP
month_released!
February, 2024
Showing 5 of 5 results
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Download
FileSet
DSR481YGC
released
Annotation file set
: Candidate regulatory elements for BSS01366 neural cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR174BSF
released
Annotation file set
: Target gene predictions for BSS01366 neural cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR628HIW
released
Annotation file set
: Chromatin states for BSS01366 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR770IYJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE neural cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR777CTL
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE neural cell
Lab:
AMP-T2D consortium
Project:
AMP