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Getting started
Schema
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
1
caQTL
1
gene expression
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
2
ChIP-seq
2
DNase-seq
2
snATAC-seq
1
ATAC-seq
1
snRNA-seq
Available data
3
bed bed3+
1
bed bed3
1
bed narrowPeak
1
tsv
File set status
6
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
4
primary cell
2
in vitro differentiated cells
Biosample term
2636
whole blood
131
monocyte
55
HeLa-S3
51
CD8-positive, alpha-beta T cell
51
H1-hESC
47
endothelial cell
44
islet of Langerhans
41
macrophage
39
kidney
39
neural progenitor cell
35
fibroblast
33
heart
32
hepatocyte
32
liver
31
retina
29
stomach
27
smooth muscle cell
26
subcutaneous adipose tissue
25
adipocyte
25
brain
25
pancreatic ductal cell
23
B cell
23
EndoC_BH1
23
K562
21
pericyte cell
20
adrenal gland
20
breast cancer cell
20
epithelial cell of proximal tubule
20
lung
20
pigmented layer of retina
19
CD14-positive monocyte
19
heart left ventricle
19
muscle of arm
19
muscle of leg
18
HFFc6
18
embryonic stem cell
18
glomerular endothelial cell
18
placenta
18
regulatory T cell
18
small intestine
17
large intestine
17
pancreatic acinar cell
17
pancreatic beta cell
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
natural killer cell
16
spleen
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
15
keratinocyte
15
muscle of back
15
pancreatic alpha cell
15
tibial nerve
14
T-helper 1 cell
14
astrocyte
14
cardiac muscle cell
14
coronary artery
14
pancreas
14
spinal cord
14
thymus
13
GM12878
13
H9
13
T cell
13
caudate nucleus
13
endothelial cell of umbilical vein
13
excitatory neuron
13
hematopoietic multipotent progenitor cell
13
left lung
13
osteoblast
13
renal cortex interstitium
13
renal pelvis
13
retinal pigment epithelial cell
13
skeletal muscle satellite cell
12
adipose tissue
12
foreskin fibroblast
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
12
pancreatic delta cell
12
right atrium auricular region
12
right lung
12
substantia nigra
11
T-helper 17 cell
11
body of pancreas
11
erythroblast
11
mesenchymal stem cell
11
omental fat pad
11
putamen
11
tibial artery
10
MCF-7
10
Rhabdomyosarcoma
10
frontal cortex
10
gastric cancer cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right kidney
10
skeletal muscle myoblast
9
Ammon's horn
9
HepG2
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
heart right ventricle
9
liposarcoma
9
ovary
9
testis
8
A549
8
B-lymphoblastoid cell line
8
ascending aorta
8
fibroblast cell line
8
foreskin keratinocyte
8
glomerular visceral epithelial cell
8
hepatic stellate cell
8
left cardiac atrium
8
mast cell
8
neutrophil
8
pituitary stalk
8
skeletal muscle fiber
7
CD4-positive helper T cell
7
Jurkat
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mature neutrophil
7
memory B cell
7
temporal lobe
6
Chondroid Chordoma
6
HUES8
6
IMR-90
6
LNCAP
6
anterior cingulate cortex
6
aorta
6
aorta wall
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
left kidney
6
lymphocyte
6
mammary gland epithelial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
plasma cell
6
sigmoid colon
6
skeletal muscle
6
smooth muscle cell of the coronary artery
6
trophoblast cell
6
type I muscle cell
6
upper lobe of left lung
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM06990
5
GM12864
5
GM12865
5
Glomerular Capillary Endothelial Cell
5
HAP-1
5
HCT-116 cell
5
HEK293
5
KARPAS-422 cell
5
Non-Classical Monocyte
Life stage
2
adult
2
embryonic
Date released
September, 2022
2
February, 2021
2
February, 2024
2
July, 2025
Software used
2
encode-ccres
2
macs
1
deeptools
1
qTLtools
1
r
1
samtools
1
umitools
Encyclopedia version
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
Lab
4
Stephen Parker, UMich
2
AMP-T2D consortium
Project
6
AMP
Collection Tags
2
T2DKP
2
DGA
2
ENCODE
RFA
4
AMP2
2
AMP
month_released!
September, 2022
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR354XGE
released
Annotation file set
: Accessible chromatin annotation of each cell type cluster identified from snRNA+snATAC profiling of human skeletal muscle - neural cell
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR205DQB
released
Annotation file set
: caQTL results in each cell type cluster identified from snRNA+snATAC profiling of human skeletal muscle - neural cell
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR770IYJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE neural cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR777CTL
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE neural cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR025YBG
released
Annotation file set
: Cell type chromatin broad peaks and bw of neural cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR811PAV
released
Annotation file set
: Cell type gene expression mean TPM and bw of neural cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP