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Getting started
Schema
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ATAC-seq
1
snATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
2636
whole blood
135
monocyte
110
heart
107
stomach
95
kidney
93
fibroblast
85
endothelial cell
84
muscle of arm
82
lung
82
placenta
77
adrenal gland
76
A549
76
small intestine
73
CD8-positive, alpha-beta T cell
72
macrophage
71
muscle of leg
70
large intestine
69
muscle of back
68
HeLa-S3
68
T-cell
67
left lung
66
B cell
66
common myeloid progenitor, CD34-positive
66
smooth muscle cell
64
CD4-positive, alpha-beta T cell
57
thymus
56
right lung
55
hematopoietic multipotent progenitor cell
55
stimulated activated CD4-positive, alpha-beta T cell
54
H1-hESC
52
hepatocyte
52
right kidney
51
natural killer cell
51
neural progenitor cell
51
renal cortex interstitium
50
liver
50
renal pelvis
48
K562
46
adipocyte
45
T cell
45
islet of Langerhans
45
left kidney
44
heart left ventricle
43
retina
41
spinal cord
39
CD14-positive monocyte
39
spleen
38
cardiac muscle cell
37
CD4-positive, alpha-beta memory T cell
33
MCF-7
33
activated CD4-positive, alpha-beta T cell
33
keratinocyte
33
pericyte
32
T-helper 1 cell
31
adipose tissue
31
pancreatic ductal cell
30
pancreas
29
heart right ventricle
29
naive thymus-derived CD4-positive, alpha-beta T cell
29
ovary
28
T-helper 17 cell
28
body of pancreas
28
regulatory T cell
28
tibial nerve
28
trophoblast cell
26
CD8-positive, alpha-beta memory T cell
26
T-helper 2 cell
26
epithelial cell of proximal tubule
26
sigmoid colon
25
psoas muscle
25
stimulated activated CD8-positive, alpha-beta memory T cell
24
dendritic cell
24
endothelial cell of lymphatic vessel
24
foreskin keratinocyte
24
gastrocnemius medialis
24
pericyte cell
23
EndoC_BH1
23
H9
23
foreskin fibroblast
23
upper lobe of left lung
22
HCT116
22
endothelial cell of umbilical vein
22
glomerular endothelial cell
22
naive thymus-derived CD8-positive, alpha-beta T cell
22
thyroid gland
21
coronary artery
21
right atrium auricular region
21
testis
21
tibial artery
20
breast cancer cell
20
mesenchymal stem cell
20
mononuclear cell
20
muscle of trunk
20
pigmented layer of retina
20
subcutaneous adipose tissue
20
transverse colon
19
HFFc6
19
HepG2
19
astrocyte
19
endocardial cell
19
hepatic stellate cell
19
omental fat pad
18
ascending aorta
18
embryonic stem cell
18
mast cell
18
neuron
18
osteoblast
18
pancreatic beta cell
17
Peyer's patch
17
erythroblast
17
fibroblast of lung
17
pancreatic acinar cell
17
pancreatic alpha cell
16
GM12878
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
induced pluripotent stem cell
16
left renal cortex interstitium
16
left renal pelvis
16
skeletal muscle satellite cell
15
activated T-cell
15
bronchial epithelial cell
15
mammary epithelial cell
15
mammary gland epithelial cell
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
skeletal muscle myoblast
14
activated CD8-positive, alpha-beta memory T cell
14
aorta
14
endocrine pancreas
14
right renal pelvis
14
skeletal muscle tissue
13
breast epithelium
13
dermis blood vessel endothelial cell
13
excitatory neuron
13
fibroblast of dermis
13
glomerular visceral epithelial cell
13
left cardiac atrium
13
naive B cell
13
neutrophil
13
prostate gland
12
colonic mucosa
12
epithelial cell of prostate
12
lymphoblastoid cell line
12
neuroblastoma cell
12
neuronal stem cell
11
IMR-90
11
esophagus muscularis mucosa
11
kidney tubule cell
11
neurosphere
11
progenitor cell of endocrine pancreas
11
thoracic aorta
10
Rhabdomyosarcoma
10
endodermal cell
10
esophagus squamous epithelium
10
foreskin melanocyte
10
gastric cancer cell
10
inflammatory macrophage
10
limb
10
lymphocyte
10
mesothelial cell
10
right lobe of liver
10
thyroid follicular cell
9
22Rv1
9
GM06990
9
HAP-1
9
HT-29
9
PC-9
9
WERI-Rb-1
9
WI38
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
esophagus
9
eye
9
liposarcoma
9
lower leg skin
9
megakaryocyte
9
memory B cell
9
progenitor cell
9
tongue
9
vagina
8
B Cell
8
GM12864
8
GM12865
8
HEK293
8
LNCaP clone FGC
8
MM.1S
8
NAMALWA cell
8
OCI-LY7
8
T47D
8
colon epithelial cell
8
duodenal mucosa
8
epithelial cell of esophagus
8
fibroblast cell line
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
immortal human breast epithelial cell line cell
8
kidney glomerular epithelial cell
8
mesendoderm
Organ
brain
Life stage
1
adult
Date released
2
November, 2021
1
November, 2022
Software used
2
macs
1
abc
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
2
ENCODE
1
AMP
Collection Tags
2
AMP
2
T2DKP
1
CMDGA
RFA
2
ENCODE3
1
AMP
organ_slims!
brain
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR952CDU
released
Annotation file set
: Accessible chromatin of oligodendrocytes from four postmortem donors, three males and one female, ages 20–28 from a single brain collection.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR460HFO
released
Annotation file set
: Target gene predictions of Oligodendrocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR044JLK
released
Annotation file set
: Accessible chromatin annotation of Oligodendrocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE