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Assay category
1
3D chromatin structure
1
DNA accessibility
1
DNA binding
1
Transcription
Assay
1
ChIP-seq
1
FAIRE-seq
1
Hi-C
1
pCHi-C
1
total RNA-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
5
Homo sapiens
Target of assay
1
RNA binding protein
1
transcription factor
Biosample type
5
tissue
Organ
5
pancreas
Life stage
4
adult
1
unknown
Available data
3
bam
3
bigWig
2
bed narrowPeak
2
bigBed narrowPeak
2
fastq
2
tsv
1
bedpe bed3+
1
hic
Platform
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer I
Run type
2
single-ended
Read length (nt)
1
50
1
51
Mapped read length (nt)
1
51
Library made from
4
DNA
1
RNA
Date released
3
March, 2020
1
November, 2018
1
October, 2018
Lab
5
AMP-T2D consortium
Replication type
22
unreplicated
5
anisogenic
3
isogenic
Showing 5 of 5 results
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Experiment
DSR832PWS
released
pCHi-C
of pancreas
Homo sapiens
pancreas
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR905BNL
released
Hi-C
of pancreas
Homo sapiens
pancreas female adult (30 years) and male adult (34 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR455NWB
released
total RNA-seq
of pancreas
Homo sapiens
pancreas female adult (30 years) and male adult (34 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR803CTG
released
FAIRE-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR141NSK
released
ChIP-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP