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Schema
Citing CMDGA
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Annotation type
3
target gene predictions
Annotation Category
3
Target gene links
Annotation type Category
3
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
113
monocyte
54
common myeloid progenitor, CD34-positive
45
CD8-positive, alpha-beta T cell
41
B cell
32
CD4-positive, alpha-beta memory T cell
32
endothelial cell
31
CD14-positive monocyte
24
regulatory T cell
23
hepatocyte
23
natural killer cell
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
macrophage
21
T-helper 1 cell
21
fibroblast
20
glomerular endothelial cell
20
mononuclear cell
19
T-helper 17 cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
18
trophoblast cell
17
T cell
16
fibroblast of lung
16
foreskin fibroblast
16
smooth muscle cell
15
T-helper 2 cell
15
keratinocyte
15
neutrophil
15
pericyte cell
15
skeletal muscle myoblast
14
CD4-positive, alpha-beta T cell
14
osteoblast
13
mammary epithelial cell
13
neurosphere
13
pancreatic ductal cell
12
bronchial epithelial cell
12
fibroblast of dermis
12
mammary gland epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
11
mast cell
10
dermis blood vessel endothelial cell
10
endothelial cell of hepatic sinusoid
10
fibroblast of cardiac tissue
10
glomerular visceral epithelial cell
9
astrocyte
9
epithelial cell of prostate
9
hepatic stellate cell
9
kidney tubule cell
9
mature neutrophil
9
naive T cell
9
pancreatic acinar cell
9
skeletal muscle satellite cell
8
adipocyte
8
endothelial cell of lymphatic vessel
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
myoepithelial cell of mammary gland
8
pancreatic delta cell
8
retinal pigment epithelial cell
8
skin fibroblast
7
CD1c-positive myeloid dendritic cell
7
kidney glomerular epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
neuronal stem cell
7
pancreatic alpha cell
7
pancreatic beta cell
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
6
T-cell
6
alternatively activated macrophage
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
dermis lymphatic vessel endothelial cell
6
endocardial cell
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
glutamatergic neuron
6
kidney epithelial cell
6
kidney interstitial cell
6
mesenchymal stem cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
skeletal muscle fiber
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
inflammatory macrophage
5
iris pigment epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
luminal epithelial cell of mammary gland
5
lung microvascular endothelial cell
5
mesangial cell
5
myofibroblast cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
non-pigmented ciliary epithelial cell
5
pancreatic stellate cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
astrocyte of the spinal cord
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
gamma-delta T cell
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
memory B cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
preadipocyte
4
regular ventricular cardiac myocyte
4
renal epithelial cell
4
stromal cell of bone marrow
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
T follicular helper cell
3
Th1 cell
3
Th17 cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
Organ
3
epithelium
3
pancreas
Date released
2
November, 2021
1
May, 2021
Software used
3
abc
Lab
2
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
2
ENCODE
1
AMP
RFA
2
ENCODE3
1
AMP
biosample_term_name!
Renin-positive Juxtaglomerular Granular Cell
files.file_type!
bigWig
month_released!
January, 2021
Showing 3 of 3 results
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Download
FileSet
DSR146SQD
released
Annotation file set
: Target gene predictions of Pancreatic Alpha Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR182RBF
released
Annotation file set
: Target gene predictions of Pancreatic Alpha Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR715HCI
released
Annotation file set
: enhancer-gene predicton of pancreatic-alpha-cell-AMP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP