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Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
7
bed bed3+
bigWig
3
bigBed narrowPeak
1
bam
1
bed gappedPeak
1
xls
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
98
monocyte
42
CD8-positive, alpha-beta T cell
28
common myeloid progenitor, CD34-positive
23
CD14-positive monocyte
19
B cell
19
endothelial cell
18
fibroblast
17
macrophage
15
endothelial cell of umbilical vein
14
CD4-positive, alpha-beta T cell
14
CD4-positive, alpha-beta memory T cell
14
foreskin fibroblast
14
smooth muscle cell
13
mammary epithelial cell
12
hepatocyte
12
natural killer cell
12
pericyte cell
11
foreskin keratinocyte
11
keratinocyte
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neutrophil
11
regulatory T cell
10
endothelial cell of hepatic sinusoid
10
fibroblast of lung
10
osteoblast
10
skeletal muscle myoblast
10
trophoblast cell
9
T cell
9
mature neutrophil
8
CD8-positive, alpha-beta memory T cell
8
T-helper 1 cell
8
bronchial epithelial cell
8
mononuclear cell
7
mast cell
7
neurosphere
7
pancreatic ductal cell
6
T-cell
6
T-helper 17 cell
6
T-helper 2 cell
6
astrocyte
6
cardiac muscle cell
6
dermis blood vessel endothelial cell
6
erythroblast
6
fibroblast of dermis
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
glutamatergic neuron
6
mammary gland epithelial cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
retinal pigment epithelial cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
alternatively activated macrophage
5
epithelial cell of prostate
5
hepatic stellate cell
5
mesenchymal stem cell
5
myofibroblast cell
5
pulmonary artery endothelial cell
5
skeletal muscle satellite cell
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
adipocyte
4
aortic adventitial fibroblast
4
cardiac fibroblast
4
choroid plexus epithelial cell
4
endothelial cell of lymphatic vessel
4
epithelial cell of esophagus
4
epithelial cell of proximal tubule
4
fibroblast of breast
4
fibroblast of cardiac tissue
4
foreskin melanocyte
4
glomerular endothelial cell
4
inflammatory macrophage
4
kidney glomerular epithelial cell
4
kidney tubule cell
4
myoepithelial cell of mammary gland
4
neuronal stem cell
4
preadipocyte
4
renal cortical epithelial cell
4
renal epithelial cell
4
skeletal muscle fiber
4
skin fibroblast
4
type I muscle cell
4
type II muscle cell
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
basal cell
3
blood cell
3
bone marrow cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endocardial cell
3
enterocyte
3
erythroid cell
3
fibroblast of peridontal ligament
3
fibroblast of the aortic adventitia
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
iris pigment epithelial cell
3
kidney epithelial cell
3
luminal epithelial cell of mammary gland
3
lung microvascular endothelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive T cell
3
neoplastic cell
3
non-pigmented ciliary epithelial cell
3
pancreatic A cell
3
pancreatic acinar cell
3
peripheral blood stem cell
3
plasma cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
skeletal muscle cell
3
smooth muscle cell of the brain vasculature
3
type B pancreatic cell
3
type II pneumocyte
2
cardiac fibroblast
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Adipose stromal cell
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Myofibroblast
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Regulatory T Cell
2
Renin-positive Juxtaglomerular Granular Cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
T Cell
2
Th2 cell
2
Transitional Principal-Intercalated Cell
2
Vascular Smooth Muscle Cell / Pericyte
2
activated CD4-positive, alpha-beta T cell
2
aortic endothelial cell
2
articular chondrocyte
2
astrocyte of the spinal cord
2
blood vessel smooth muscle cell
2
brain microvascular endothelial cell
2
brain pericyte
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
enteric smooth muscle cell
2
erythroid progenitor cell
2
fat cell
Organ
1
epithelium
1
pancreas
Life stage
1
unknown
Date released
January, 2021
1
September, 2022
Software used
r
1
macs
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
files.file_type!
bigWig
month_released!
January, 2021
software_used.software.name!
r
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR938VDA
released
Annotation file set
: Accessible chromatin from snATAC-seq of alpha cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP