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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
Available data
4
bed bed3+
2
bigWig
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
8
heart
6
NAMALWA cell
6
SK-N-DZ
6
SK-N-SH
5
glomerular visceral epithelial cell
4
brain
4
heart left ventricle
4
heart right ventricle
4
nephron progenitor
4
psoas muscle
3
A673
3
BE(2)-C
3
CD14-positive, CD16-negative classical monocyte
3
CMK
3
DND-41
3
Daoy
3
G401
3
GM03348
3
GM08714
3
HepG2
3
MG63
3
S-shaped body
3
SJCRH30
3
SK-N-MC
3
WERI-Rb-1
3
kidney
3
kidney interstitial cell
3
lung
3
lymphocyte
3
medulloblastoma
3
sigmoid colon
3
small intestine
3
spleen
3
stomach
3
thymus
3
urothelium cell line
2
alternatively activated macrophage
2
endothelial cell of hepatic sinusoid
2
erythroblast
2
mature neutrophil
2
mesangial cell
2
renal vesicle
1
cardiac fibroblast
1
hindlimb muscle
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
cardiac atrium fibroblast
1
cerebellum
1
diencephalon
1
endothelial cell
1
epithelial cell of distal tubule
1
fetal heart
1
forelimb muscle
1
frontal cortex
1
glomerular endothelial cell
1
hepatoblast
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
left cardiac atrium
1
left renal pelvis
1
leukocyte
1
liver
1
meso-epithelial cell
1
metanephros
1
muscle of arm
1
muscle of leg
1
occipital lobe
1
pancreatic ductal cell
1
parietal lobe
1
pericardium fibroblast
1
proximal tubule
1
renal connecting tubule
1
renal cortex interstitium
1
renal pelvis
1
retina
1
right renal pelvis
1
skeletal muscle tissue
1
temporal lobe
1
ureteric bud
Organ
3
stomach
1
epithelium
1
eye
1
pancreas
Life stage
65
embryonic
47
adult
4
child
3
unknown
1
fetal
1
young adult
Date released
3
September, 2022
1
January, 2020
1
October, 2019
Software used
2
macs
2
r
1
chromhmm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR929ENR
released
Annotation file set
: Candidate regulatory elements for BSS01654 stomach from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337JFE
released
Annotation file set
: Target gene predictions for BSS01654 stomach from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR901NPX
released
Annotation file set
: Chromatin states for BSS01654 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391RSX
released
Annotation file set
: Accessible chromatin annotation of retina from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR920WKD
released
Annotation file set
: Pancreatic ductal cell accessible chromatin annotation of overlapping ATAC-seq sites from 3 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP