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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
109
monocyte
46
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
30
B cell
28
endothelial cell
27
CD14-positive monocyte
23
CD4-positive, alpha-beta memory T cell
21
fibroblast
21
pericyte cell
17
hepatocyte
17
smooth muscle cell
16
macrophage
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
astrocyte
15
endothelial cell of umbilical vein
15
foreskin fibroblast
15
foreskin keratinocyte
15
natural killer cell
14
T cell
14
keratinocyte
14
mononuclear cell
14
osteoblast
14
trophoblast cell
13
fibroblast of lung
13
mammary epithelial cell
12
CD4-positive, alpha-beta T cell
12
T-helper 1 cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
skeletal muscle myoblast
11
pancreatic beta cell
11
pancreatic ductal cell
10
T-helper 17 cell
10
T-helper 2 cell
10
bronchial epithelial cell
10
neurosphere
10
pancreatic alpha cell
9
erythroblast
9
fibroblast of cardiac tissue
9
fibroblast of dermis
9
mammary gland epithelial cell
9
naive thymus-derived CD4-positive, alpha-beta T cell
neutrophil
9
pancreatic delta cell
9
retinal pigment epithelial cell
9
skeletal muscle satellite cell
8
dermis blood vessel endothelial cell
8
glutamatergic neuron
8
pancreatic acinar cell
7
epithelial cell of prostate
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney tubule cell
7
skin fibroblast
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
colon epithelial cell
6
fibroblast of breast
6
hepatic stellate cell
6
luminal epithelial cell of mammary gland
6
memory B cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
type I muscle cell
6
type II muscle cell
6
type II pneumocyte
5
CD4-positive helper T cell
5
cardiac muscle cell
5
choroid plexus epithelial cell
5
cortical cell of adrenal gland
5
epithelial cell of proximal tubule
5
foreskin melanocyte
5
gabaergic neuron
5
glomerular visceral epithelial cell
5
inhibitory neuron
5
kidney glomerular epithelial cell
5
mesenchymal stem cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
plasma cell
5
renal cortical epithelial cell
5
skeletal muscle fiber
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
glomerular endothelial cell
4
iris pigment epithelial cell
4
kidney epithelial cell
4
lung microvascular endothelial cell
4
mast cell
4
megakaryocyte
4
non-pigmented ciliary epithelial cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
cardiac fibroblast
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
astrocyte of the spinal cord
3
basal cell
3
bone marrow cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
epithelial cell of esophagus
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the conjunctiva
3
kidney capillary endothelial cell
3
mesothelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
schwann cell
3
stromal cell of bone marrow
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
T follicular helper cell
2
Th2 cell
2
activated CD8-positive, alpha-beta T cell
2
adipocyte
2
alveolar macrophage
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
basal cell of epidermis
2
brain pericyte
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
leukemic stem cell
2
leukocyte
2
luteal cell
2
mammary stem cell
2
mantle cell lymphoma cell
2
mature NK T cell
2
mature natural killer cell
2
mature neutrophil
2
melanocyte
2
memory T cell
2
memory regulatory T cell
Organ
2
epithelium
2
stomach
Date released
2
November, 2021
Software used
1
abc
deltasvm
1
macs
Lab
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
2
ENCODE3
biosample_term_name!
neutrophil
software_used.software.name!
deltasvm
Showing 2 of 2 results
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Download
FileSet
DSR283LYA
released
Annotation file set
: Target gene predictions of Parietal Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR973TTL
released
Annotation file set
: Accessible chromatin annotation of Parietal Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE