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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
2
Homo sapiens
Biosample type
3
primary cell
Biosample term
130
monocyte
54
common myeloid progenitor, CD34-positive
49
CD8-positive, alpha-beta T cell
43
B cell
38
endothelial cell
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
31
CD14-positive monocyte
31
hepatocyte
30
macrophage
28
regulatory T cell
24
pericyte cell
23
T-helper 1 cell
23
natural killer cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
epithelial cell of proximal tubule
22
smooth muscle cell
20
T-helper 17 cell
20
endothelial cell of umbilical vein
20
glomerular endothelial cell
20
mononuclear cell
19
foreskin keratinocyte
19
pancreatic ductal cell
18
pancreatic beta cell
18
trophoblast cell
17
T-helper 2 cell
17
astrocyte
17
keratinocyte
17
osteoblast
17
pancreatic alpha cell
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
foreskin fibroblast
16
pancreatic acinar cell
16
pancreatic delta cell
16
skeletal muscle myoblast
15
CD4-positive, alpha-beta T cell
15
neutrophil
14
naive thymus-derived CD4-positive, alpha-beta T cell
13
mammary epithelial cell
13
mammary gland epithelial cell
13
neurosphere
13
skeletal muscle satellite cell
12
bronchial epithelial cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
11
erythroblast
10
dermis blood vessel endothelial cell
10
glomerular visceral epithelial cell
10
hepatic stellate cell
10
kidney tubule cell
10
retinal pigment epithelial cell
9
epithelial cell of prostate
9
mast cell
9
mature neutrophil
9
memory B cell
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
skeletal muscle fiber
9
skin fibroblast
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
kidney glomerular epithelial cell
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
8
renal cortical epithelial cell
7
CD1c-positive myeloid dendritic cell
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
endothelial cell of lymphatic vessel
7
kidney epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
mesangial cell
7
mesenchymal stem cell
7
pulmonary artery endothelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
T-cell
6
adipocyte
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
gamma-delta T cell
6
kidney interstitial cell
6
myofibroblast cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
plasma cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
basal cell
5
brain microvascular endothelial cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
endocardial cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
tracheal epithelial cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
inflammatory macrophage
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
Date released
2
January, 2021
1
May, 2020
Software used
1
cicero
1
macs
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
2
T1D
1
AMP
RFA
2
T1D
1
AMP
biosample_type!
cell line
month_released!
August, 2021
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR059MDJ
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of plasmacytoid_dendritic
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR260WKD
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of plasmacytoid_dendritic
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR321ZSO
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal plasmacytoid dendritic cell
Lab:
AMP-T2D consortium
Project:
AMP