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Getting started
Schema
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Annotation type
5
accessible chromatin
Annotation Category
5
cis-regulatory elements
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
89
brain
86
head of caudate nucleus
59
dorsolateral prefrontal cortex
48
posterior cingulate gyrus
24
glutamatergic neuron
23
caudate nucleus
22
GABAergic neuron
18
frontal cortex
18
substantia nigra
17
cerebellum
16
layer of hippocampus
16
putamen
14
temporal lobe
13
Ammon's horn
12
SK-N-DZ
12
SK-N-SH
12
astrocyte
11
choroid plexus epithelial cell
10
angular gyrus
10
pituitary stalk
9
SK-N-MC
9
cingulate gyrus
9
globus pallidus
9
midbrain
8
medium spiny neuron
8
neuron
8
vip GABAergic cortical interneuron
7
BE(2)-C
7
Daoy
7
L2/3 intratelencephalic projecting glutamatergic neuron
7
amygdala
7
astrocyte of the cerebellum
7
astrocyte of the hippocampus
7
brain microvascular endothelial cell
7
cerebellar cortex
7
hypothalamus
7
medulla oblongata
7
middle frontal gyrus
7
nucleus accumbens
7
oligodendrocyte
7
pons
6
A172
6
Brodmann (1909) area 46
6
L6 intratelencephalic projecting glutamatergic neuron
6
M059J
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
endothelial cell
6
sncg GABAergic interneuron
6
sst GABAergic interneuron
5
cardiac fibroblast
5
L5 intratelencephalic projecting glutamatergic neuron
5
brain pericyte
5
inferior parietal cortex
5
oligodendrocyte precursor cell
5
pvalb GABAergic interneuron
4
H54
4
L2/3-6 intratelencephalic projecting glutamatergic cortical neuron
4
L4 intratelencephalic projecting glutamatergic neuron
4
U-87 MG
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
medial ganglionic eminence derived interneuron
4
medulloblastoma
4
near-projecting glutamatergic cortical neuron
4
smooth muscle cell
3
BE2C
3
L4/5 intratelencephalic projecting glutamatergic neuron
3
L6 corticothalamic-projecting glutamatergic cortical neuron
3
L6b glutamatergic cortical neuron
3
Microglia
3
prefrontal cortex
2
CGE interneuron
2
Purkinje cell
2
hippocampal neuron
2
macrophage
2
middle frontal area 46
2
pituitary gland
2
radial glial cell
1
brain microvascular endothelial cell
1
Bergmann glial cell
1
Brodmann (1909) area 9
1
D1/D2-hybrid medium spiny neuron
1
D341Med
1
D721Med
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Endothelial Cell
1
Glioblastoma
1
H4
1
Lamp5 Lhx6 neuron
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
astrocyte of the spinal cord
1
bed nucleus of stria terminalis
1
bipolar neuron
1
cardiac fibroblast
1
cell
1
cerebellar granule cell
1
cerebellar hemisphere
1
cholinergic neuron
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
ecto neural progenitor cell
1
entorhinal cortex
1
ependymal cell
1
extratelencephalic-projecting glutamatergic cortical neuron
1
frontal pole
1
lamp5 GABAergic interneuron
1
leukocyte
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
neural progenitor cell
1
neuronal stem cell
1
nucleus of ventral thalamus
1
occipital lobe
1
paraventricular nucleus of hypothalamus
1
pericyte
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
pvalb chandelier GABAergic interneuron
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
smooth muscle cell of the brain vasculature
1
sst chodl GABAergic interneuron
1
subiculum
1
superior parietal cortex
1
superior temporal gyrus
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
1
vascular associated smooth muscle cell
Organ
5
brain
Date released
5
July, 2026
Lab
5
AMP-T2D consortium
Project
5
AMP
Collection Tags
5
CATlas
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR225190
released
Annotation file set
: Accessible chromatin sites for PVALB+ GABAergic neurons - type 4 in the human brain from CATlas.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR795696
released
Annotation file set
: Accessible chromatin sites for PVALB+ GABAergic neurons - type 3 in the human brain from CATlas.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR178093
released
Annotation file set
: Accessible chromatin sites for PVALB+ GABAergic neurons - type 2 in the human brain from CATlas.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR077832
released
Annotation file set
: Accessible chromatin sites for PVALB+ GABAergic neurons - type 1 in the human brain from CATlas.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR946667
released
Annotation file set
: Accessible chromatin sites for PVALB+ GABAergic neurons in the human brain from CATlas.
Lab:
AMP-T2D consortium
Project:
AMP