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Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
candidate regulatory elements
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
56
large intestine
23
sigmoid colon
19
transverse colon
11
breast epithelium
10
colonic mucosa
9
mucosa of rectum
8
muscle layer of colon
8
urinary bladder
4
rectum smooth muscle tissue
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
rectal smooth muscle tissue
Organ
4
intestine
4
large intestine
4
musculature of body
0
breast
0
urinary bladder
Life stage
3
adult
Date released
3
September, 2022
1
August, 2017
Software used
2
chromhmm
2
r
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR810KDL
released
Annotation file set
: Candidate regulatory elements for BSS01475 rectum smooth muscle tissue from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR055KZV
released
Annotation file set
: Target gene predictions for BSS01475 rectum smooth muscle tissue from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR614UTJ
released
Annotation file set
: Chromatin states for BSS01475 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR802656
released
Annotation file set
: ChromHMM 13-state model for rectal smooth muscle
Lab:
Stephen Parker, UMich
Project:
AMP