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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
caQTL
1
candidate regulatory elements
1
chromatin state
1
gene expression
Annotation Category
2
Target gene links
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
snATAC-seq
Available data
4
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
3
cell line
Biosample term
115
monocyte
54
common myeloid progenitor, CD34-positive
47
CD8-positive, alpha-beta T cell
41
B cell
34
endothelial cell
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
31
CD14-positive monocyte
29
macrophage
25
hepatocyte
24
pericyte cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
natural killer cell
22
smooth muscle cell
21
regulatory T cell
20
endothelial cell of umbilical vein
20
mononuclear cell
19
foreskin keratinocyte
18
trophoblast cell
17
keratinocyte
16
T-helper 1 cell
16
astrocyte
16
fibroblast of lung
16
foreskin fibroblast
16
skeletal muscle myoblast
15
CD4-positive, alpha-beta T cell
15
neutrophil
15
osteoblast
14
T-helper 17 cell
14
T-helper 2 cell
14
pancreatic ductal cell
13
mammary epithelial cell
13
mammary gland epithelial cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
13
pancreatic beta cell
13
skeletal muscle satellite cell
12
bronchial epithelial cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
pancreatic alpha cell
11
erythroblast
11
pancreatic acinar cell
11
pancreatic delta cell
10
dermis blood vessel endothelial cell
10
kidney tubule cell
10
retinal pigment epithelial cell
9
epithelial cell of prostate
9
hepatic stellate cell
9
mature neutrophil
9
naive T cell
9
skeletal muscle fiber
9
skin fibroblast
8
epithelial cell of proximal tubule
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glomerular endothelial cell
8
glutamatergic neuron
8
kidney glomerular epithelial cell
8
mast cell
8
myoepithelial cell of mammary gland
8
renal cortical epithelial cell
7
CD1c-positive myeloid dendritic cell
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
endothelial cell of lymphatic vessel
7
glomerular visceral epithelial cell
7
kidney epithelial cell
7
luminal epithelial cell of mammary gland
7
mesenchymal stem cell
7
pulmonary artery endothelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
T-cell
6
adipocyte
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
memory B cell
6
myofibroblast cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
alternatively activated macrophage
5
basal cell
5
brain microvascular endothelial cell
5
endocardial cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
lung microvascular endothelial cell
5
naive B cell
5
non-pigmented ciliary epithelial cell
5
pancreatic polypeptide-secreting cell
5
plasma cell
5
tracheal epithelial cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
inflammatory macrophage
4
megakaryocyte
4
mesothelial cell
4
neuronal stem cell
4
pancreatic stellate cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
type I pneumocyte
3
Ishikawa
3
T follicular helper cell
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
club cell
3
enteric neuron
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
glial cell
3
goblet cell
3
leukocyte
3
mammary stem cell
3
mesangial cell
3
microglial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
schwann cell
3
smooth muscle cell of the coronary artery
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th2 cell
2
alveolar macrophage
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
cholangiocyte
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of coronary artery
2
enterochromaffin-like cell
Organ
3
artery
3
blood vessel
3
heart
3
vasculature
Life stage
3
unknown
1
adult
Date released
3
September, 2022
1
February, 2020
1
February, 2023
1
May, 2021
Software used
3
r
1
abc
1
chromhmm
1
rasqual
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
files.file_type!
tsv
organ_slims!
vagina
Showing 6 of 6 results
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Download
FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR826UMV
released
Annotation file set
: Candidate regulatory elements for BSS00170 regular cardiac myocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR534BXG
released
Annotation file set
: Target gene predictions for BSS00170 regular cardiac myocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR160TMQ
released
Annotation file set
: Chromatin states for BSS00170 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR277QFW
released
Annotation file set
: Gene expression levels of Coronary artery smooth muscle cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP