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Schema
Citing CMDGA
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Annotation type
1
candidate regulatory elements
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
128
monocyte
49
CD8-positive, alpha-beta T cell
42
endothelial cell
41
common myeloid progenitor, CD34-positive
35
B cell
32
hepatocyte
31
fibroblast
31
macrophage
27
CD14-positive monocyte
23
CD4-positive, alpha-beta memory T cell
23
pericyte cell
23
regulatory T cell
22
smooth muscle cell
21
epithelial cell of proximal tubule
21
natural killer cell
19
T-helper 1 cell
19
glomerular endothelial cell
18
T cell
18
T-helper 17 cell
18
pancreatic beta cell
18
pancreatic ductal cell
17
pancreatic alpha cell
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
pancreatic acinar cell
16
pancreatic delta cell
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
14
T-helper 2 cell
14
keratinocyte
14
mononuclear cell
14
naive thymus-derived CD4-positive, alpha-beta T cell
13
endothelial cell of umbilical vein
13
neutrophil
13
osteoblast
13
trophoblast cell
12
CD4-positive, alpha-beta T cell
12
excitatory neuron
12
foreskin fibroblast
11
skeletal muscle myoblast
11
skeletal muscle satellite cell
10
fibroblast of lung
10
mammary epithelial cell
10
mammary gland epithelial cell
10
neurosphere
9
bronchial epithelial cell
9
fibroblast of cardiac tissue
9
glomerular visceral epithelial cell
9
mast cell
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
skeletal muscle fiber
8
dermis blood vessel endothelial cell
8
fibroblast of dermis
8
glutamatergic neuron
8
hepatic stellate cell
8
pancreatic stellate cell
7
endothelial cell of lymphatic vessel
7
epithelial cell of prostate
7
erythroblast
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
7
mesangial cell
7
retinal pigment epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
T-cell
6
adipocyte
6
cardiac muscle cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
fibroblast of breast
6
gamma-delta T cell
6
kidney epithelial cell
6
kidney glomerular epithelial cell
6
luminal epithelial cell of mammary gland
6
mesenchymal stem cell
6
myoepithelial cell of mammary gland
6
myofibroblast cell
6
naive B cell
6
naive T cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
plasma cell
6
renal cortical epithelial cell
6
skin fibroblast
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
choroid plexus epithelial cell
5
effector memory CD8-positive, alpha-beta T cell
5
endocardial cell
5
epithelial cell of esophagus
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
foreskin melanocyte
5
gabaergic neuron
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
pancreatic endothelial cell
5
pulmonary artery endothelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
4
activated CD4-positive, alpha-beta T cell
4
adult endothelial progenitor cell
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
dermis lymphatic vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
fibroblast of the aortic adventitia
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
lung microvascular endothelial cell
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
nephron progenitor
4
neuronal stem cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
smooth muscle cell of the esophagus
4
tracheal epithelial cell
Life stage
2
unknown
Date released
2
September, 2022
Software used
2
r
chromhmm
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
month_released!
June, 2020
software_used.software.name!
chromhmm
Showing 2 of 2 results
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Download
FileSet
DSR826UMV
released
Annotation file set
: Candidate regulatory elements for BSS00170 regular cardiac myocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR534BXG
released
Annotation file set
: Target gene predictions for BSS00170 regular cardiac myocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP