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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
cell line
1
in vitro differentiated cells
Biosample term
81
kidney
63
small intestine
56
large intestine
42
right kidney
40
renal cortex interstitium
40
renal pelvis
36
left kidney
23
epithelial cell of proximal tubule
23
sigmoid colon
21
glomerular endothelial cell
19
transverse colon
14
Peyer's patch
13
glomerular visceral epithelial cell
12
left renal cortex interstitium
12
left renal pelvis
12
right renal pelvis
11
right renal cortex interstitium
10
colonic mucosa
10
kidney tubule cell
9
HEK293
9
colon epithelial cell
9
duodenal mucosa
9
mucosa of rectum
8
HT-29
8
kidney glomerular epithelial cell
8
muscle layer of colon
8
muscle layer of duodenum
8
renal cortical epithelial cell
7
SW480
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
6
HCT116
6
enterocyte
5
ACHN
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Caki2
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
RCC 7860
5
Renin-positive Juxtaglomerular Granular Cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
renal cell carcinoma
4
G401
4
HCT-116 cell
4
RKO
4
cortex of kidney
4
enteric smooth muscle cell
4
kidney connecting tubule epithelial cell
4
rectum smooth muscle tissue
3
HEK293T
3
S-shaped body
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
2
enterocyte of epithelium of small intestine
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
metanephros
2
paneth cell
2
renal connecting tubule
2
renal principal cell
2
small intestine goblet cell
2
ureteric bud
1
left kidney
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
RCC
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
epithelial cell of distal tubule
1
glomerular epithelium
1
intestinal epithelial cell
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
nephron tubule
1
parietal epithelial cell
1
proximal tubule
1
rectal smooth muscle tissue
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
small intestine - terminal Ileum
Organ
5
kidney
0
intestine
Life stage
3
adult
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
macs
2
r
1
chromhmm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
extraembryonic component
Showing 5 of 5 results
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Download
FileSet
DSR155SVZ
released
Annotation file set
: Candidate regulatory elements for BSS01481 renal cell carcinoma from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR881RBC
released
Annotation file set
: Target gene predictions for BSS01481 renal cell carcinoma from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR887WYK
released
Annotation file set
: Chromatin states for BSS01481 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR283ABW
released
Annotation file set
: Histone modifications annotation for Kidney Carcinoma,_Renal_Cell from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002SLX
released
Annotation file set
: Accessible chromatin annotation for Kidney Carcinoma, Renal Cell from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP