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Citing CMDGA
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Annotation type
1
eQTL
1
variant allelic effects
Annotation Category
2
Genetic variant effects
Annotation type Category
1
DNase-seq
1
RNA-seq
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
10
islet of Langerhans
10
macrophage
8
fibroblast
6
lymphoblastoid cell line
4
T cell
3
blood cell
3
brain
3
coronary artery
3
endothelial cell
3
enterocyte
3
heart left ventricle
3
monocyte
3
myofibroblast cell
3
putamen
3
right atrium auricular region
3
skin of body
3
smooth muscle cell
3
tibial artery
3
tibial nerve
2
cardiac fibroblast
2
muscle of leg
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Schwann cell
2
adipose tissue
2
articular chondrocyte
2
basal cell
2
cardiac muscle cell
2
caudate nucleus
2
epithelial cell of esophagus
2
frontal cortex
2
goblet cell
2
heart
2
hepatocyte
2
iPSC derived cell line
2
muscle
2
pancreas
2
regulatory T cell
2
retina
2
skeletal muscle fiber
2
subcutaneous adipose tissue
2
substantia nigra
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
Satellite Cells, Skeletal Muscle
1
T follicular helper cell
1
T-helper 1 cell
1
T-helper 17 cell
1
T-helper 2 cell
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
adrenal gland
1
amygdala
1
anterior cingulate cortex
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
brain pericyte
1
breast
1
bronchial goblet cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cerebellar hemisphere
1
cerebellum
1
cerebellum (Hemisphere)
1
choroid plexus epithelial cell
1
colon sigmoid
1
cortex
1
cortex of kidney
1
cortical cell of adrenal gland
1
dorsolateral prefrontal cortex
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
esophagus
1
esophagus mucosa
1
esophagus muscularis mucosa
1
fat cell
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granulosa cell
1
heart right ventricle
1
helper T cell
1
hepatic stellate cell
1
hypothalamus
1
keratinocyte
1
kidney
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
layer of hippocampus
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
liver
1
luminal epithelial cell of prostatic duct
1
lung
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
medulla oblongata
1
mesenchymal stem cell
1
mesothelial cell
1
microglial cell
1
midbrain
1
middle frontal gyrus
1
minor salivary gland
1
muscle of arm
1
naive B cel
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
neutrophil
1
nucleus accumbens
1
occipital lobe
1
ovary
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
pituitary gland
1
placenta
1
pons
1
prostate gland
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
sensory neuron
1
skeletal muscle cell
1
skeletal muscle myoblast
1
skeletal muscle tissue
1
small intestine
1
smooth muscle cell of the brain vasculature
1
spinal cord
1
spleen
1
stomach
1
superior temporal gyrus
1
testis
1
thoracic aorta
1
thyroid follicular cell
1
thyroid gland
1
transverse colon
1
type I muscle cell
1
type II muscle cell
1
type II pneumocyte
1
uterus
1
vagina
1
visceral abdominal adipose tissue
Organ
2
eye
Life stage
1
adult
Date released
1
February, 2020
1
May, 2020
Software used
25
macs
7
r
3
chromhmm
3
encode-ccres
1
deltasvm
1
qTLtools
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
liver
Showing 2 of 2 results
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Download
FileSet
DSR757CEL
released
Annotation file set
: Genetic variants with deltaSVM predictions in retina DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR010VOR
released
Annotation file set
: cis-eQTL of eye from EyeGEx
Lab:
AMP-T2D consortium
Project:
AMP