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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
2
ChIP-seq
1
DNase-seq
Available data
bed bed3+
2
bed bed9
1
bigWig
File set status
3
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
0
in vitro differentiated cells
Biosample term
28
islet of Langerhans
24
heart
23
kidney
21
brain
21
stomach
18
lung
17
liver
16
adrenal gland
16
muscle of arm
16
small intestine
15
muscle of leg
15
placenta
14
subcutaneous adipose tissue
13
large intestine
13
left lung
13
muscle of back
12
adipose tissue
12
neural progenitor cell
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
right kidney
11
right lung
11
thymus
11
tibial nerve
10
body of pancreas
10
caudate nucleus
10
heart left ventricle
9
cerebellum
9
coronary artery
9
extended pluripotent stem (EPS) cells
9
frontal cortex
9
induced pluripotent stem cell
9
left kidney
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
putamen
9
renal cortex interstitium
9
renal pelvis
9
right atrium auricular region
9
substantia nigra
9
tibial artery
8
ascending aorta
8
spinal cord
8
spleen
6
Ammon's horn
6
amygdala
6
anterior cingulate cortex
6
embryonic stem cell
6
heart right ventricle
6
hypothalamus
6
nucleus accumbens
6
ovary
6
right lobe of liver
6
skeletal muscle tissue
5
C1 segment of cervical spinal cord
5
aorta
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
retina
5
sigmoid colon
5
temporal lobe
5
testis
5
thyroid gland
5
transverse colon
4
angular gyrus
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
gastrocnemius medialis
4
layer of hippocampus
4
muscle of trunk
4
psoas muscle
4
right cardiac atrium
4
skin of body
4
vagina
4
visceral abdominal adipose tissue
3
Peyer's patch
3
adipocyte
3
cartilage tissue
3
chorion membrane
3
esophagus
3
esophagus muscularis mucosa
3
hepatocyte(AFP)
3
left renal cortex interstitium
3
pancreas
3
pancreatic ductal cell
3
prostate gland
3
right renal cortex interstitium
3
thoracic aorta
3
upper lobe of left lung
3
uterus
2
Brodmann (1909) area 46
2
adipose-derived stem cell
2
blood
2
breast epithelium
2
cingulate gyrus
2
colonic mucosa
2
differentiating adipose-derived stem cell
2
dorsolateral prefrontal cortex
2
duodenal mucosa
2
endodermal cell
2
esophagus squamous epithelium
2
eye
2
germinal matrix
2
globus pallidus
2
left cardiac atrium
2
left renal pelvis
2
limb
2
lower leg skin
2
medulla oblongata
2
mesenchymal stem cell
2
midbrain
2
middle frontal gyrus
2
minor salivary gland
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
occipital lobe
2
parathyroid adenoma
2
pons
2
right renal pelvis
2
smooth muscle cell
2
stomach smooth muscle
2
superior temporal gyrus
2
tongue
2
trophoblast
2
urinary bladder
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
abdominal aorta artery
1
amnion
1
aorta wall
1
aortic valve
1
arm bone
1
bipolar neuron
1
bladder
1
breast
1
breast - mammary tissue
1
cardiac fibroblast
1
cardiac mesoderm primordium
1
cardiac muscle cell
1
cardiac muscle cell (pacemaker cell)
1
cerebellar cortex
1
cerebellar hemisphere
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
cortex
1
cortex of kidney
1
diencephalon
1
ectodermal cell
1
embryonic facial prominence
1
endothelial cell
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
excitatory neuron
1
fallopian tube
1
femur
1
gastroesophageal sphincter
1
germinal center
1
hepatocyte
1
hippocampal neuron
1
inferior parietal cortex
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
islet precursor cell
1
kidney - cortex
1
kidney - medulla
1
leg bone
1
lower motor neuron
1
mesendoderm
1
mesodermal cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
metanephros
1
mitral valve
1
mucosa of stomach
1
myocyte
1
neural cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
olfactory neurosphere cell line
1
parietal lobe
1
pituitary
1
pituitary gland
1
prostate
1
pulmonary valve
1
rectum smooth muscle tissue
1
renal glomerulus
1
skeletal muscle
Organ
3
kidney
Life stage
3
embryonic
Date released
2
September, 2022
1
May, 2020
Software used
2
chromhmm
1
deltasvm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
files.file_type!
bed bed3+
Showing 3 of 3 results
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Download
FileSet
DSR134NZF
released
Annotation file set
: Chromatin states for BSS01532 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR457ZRQ
released
Annotation file set
: Chromatin states for BSS01531 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR642JOJ
released
Annotation file set
: Variant allelic effects of right renal cortex interstitium ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP