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Schema
Clear Filters
Annotation type
2
differential activity
2
eQTL
1
Fine-mapped variants
1
chromatin state
1
gene expression
Annotation Category
3
Gene expression levels
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
6
RNA-seq
1
ChIP-seq
Available data
6
tsv
1
bed bed3+
File set status
7
released
Genome assembly (visualization)
1
hg19
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
2636
whole blood
90
heart
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
liver
54
muscle of back
52
left lung
50
neural progenitor cell
48
thymus
45
right lung
44
islet of Langerhans
43
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
35
spinal cord
34
heart left ventricle
34
spleen
31
adipose tissue
26
MCF-7
26
subcutaneous adipose tissue
25
tibial nerve
24
body of pancreas
23
EndoC_BH1
23
sigmoid colon
22
caudate nucleus
22
pancreas
21
adipocyte
20
breast cancer cell
20
coronary artery
20
ovary
20
pigmented layer of retina
20
psoas muscle
19
HFFc6
19
heart right ventricle
19
right atrium auricular region
18
gastrocnemius medialis
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
embryonic stem cell
17
muscle of trunk
17
omental fat pad
17
testis
16
GM12878
16
H9
16
chorionic villus
16
induced pluripotent stem cell
16
layer of hippocampus
16
skeletal muscle tissue
16
upper lobe of left lung
15
ascending aorta
15
cerebellum
15
frontal cortex
14
endocrine pancreas
14
prostate gland
14
putamen
13
Peyer's patch
13
aorta
13
temporal lobe
12
Ammon's horn
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mesenchymal stem cell
12
neuroblastoma cell
11
breast epithelium
11
cardiac muscle cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
lymphocyte
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
HEK293
9
IMR-90
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
HAP-1
8
HL-60
8
HT-29
8
KARPAS-422 cell
8
MM.1S
8
NAMALWA cell
8
cingulate gyrus
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
Jurkat
7
LHCN-M2
7
LNCaP clone FGC
7
LoVo cell
7
MG63
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
neuronal stem cell
7
right lobe of liver
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HCT116
6
HUES6
6
HUES8
6
HuH-7
6
KBM-7
6
LNCAP
6
OCI-LY7
6
PC-9
6
SJSA1
6
SW480
6
WI38
6
anterior cingulate cortex
6
aorta wall
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
mesodermal cell
6
midbrain
6
middle frontal gyrus
6
mucosa of rectum
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
pancreatic ductal cell
6
skeletal muscle
6
superior temporal gyrus
Organ
7
musculature of body
Life stage
6
adult
Date released
5
March, 2025
1
August, 2017
1
February, 2024
Software used
3
deseq2
3
qTLtools
1
chromhmm
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
Collection Tags
6
STARNET
RFA
7
AMP
biosample_type!
primary cell
Showing 7 of 7 results
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Download
FileSet
DSR443SJJ
released
Annotation file set
: This file contains fine-mapping results for cis-eQTLs, identifying likely causal variants from STARNET bulk RNA-seq milestone 16 in skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR820CRJ
released
Annotation file set
: This file includes eQTLs that regulate gene expression from distant locations from STARNET bulk RNA-seq milestone 16 in skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR906CZN
released
Annotation file set
: This file contains eQTLs that regulate nearby gene expression from STARNET bulk RNA-seq milestone 16 in skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR489AMO
released
Annotation file set
: Tissue-specific differentially expressed genes for CAD case/control status from STARNET bulk RNA seq data for skeletal muscle (FDR=10%)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR823VFE
released
Annotation file set
: Tissue-specific gene expression from STARNET bulk RNA seq data for skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR712UEE
released
Annotation file set
: Tissue-specific differentially expressed genes for CAD case/control status from STARNET bulk RNA seq data for skeletal muscle (FDR=10%)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR344424
released
Annotation file set
: ChromHMM 13-state model for skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP