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Schema
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Embeddings type
4
Gene expression
2
Accessible chromatin
Embeddings Category
2
umap
Underlying Assay
1
10X snATAC-seq
Available data
2
h5ad
1
tsv
File set status
2
released
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
4
islet of Langerhans
2
skeletal muscle
1
artery
1
carotid canal
1
liver
1
lung
1
pancreas
1
peripheral blood mononuclear cell
1
skeletal muscle tissue
1
subcutaneous adipose tissue
1
tissues
Tissue term
2
skeletal muscle tissue
Organ
2
musculature of body
Life stage
2
adult
Date released
1
April, 2025
1
July, 2025
Encyclopedia version
1
fusion_consented.snatac.h5ad
Lab
1
AMP-T2D consortium
1
Stephen Parker, UMich
Project
2
AMP
RFA
1
AMP
1
AMP2
Showing 2 of 2 results
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR186384
released
Embeddings file set
: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP