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Embeddings type
3
Gene expression
1
Accessible chromatin
Embeddings Category
4
umap
Underlying Assay
1
10X scRNA-seq
Available data
2
h5ad
2
rds
File set status
4
released
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
6
islet of Langerhans
5
heart
5
pancreas
4
skeletal muscle
3
kidney
3
liver
3
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2
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2
peripheral blood mononuclear cell
2
skeletal muscle tissue
1
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1
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1
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1
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1
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1
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1
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1
eye
1
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1
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1
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1
large intestine
1
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1
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1
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1
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1
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1
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1
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1
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1
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1
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1
tissues
1
tongue
1
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1
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1
vasculature
1
visceral abdominal adipose tissue
1
visceral fat
Tissue term
2
skeletal muscle tissue
1
muscle
1
skeletal muscle
Organ
4
musculature of body
Life stage
3
adult
Date released
April, 2025
2
July, 2025
1
February, 2025
1
June, 2025
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
2
AMP-T2D consortium
2
Stephen Parker, UMich
Project
4
AMP
RFA
2
AMP
2
AMP2
month_released!
April, 2025
Showing 4 of 4 results
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR759180
released
Embeddings file set
: Single cell reference map of human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024XGL
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 30 samples.
Lab:
AMP-T2D consortium
Project:
AMP