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Embeddings type
2
Accessible chromatin
2
Gene expression
Embeddings Category
4
umap
Underlying Assay
1
10X snATAC-seq
1
10X snRNA-seq
Available data
4
h5ad
1
tsv
File set status
4
released
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
4
skeletal muscle
2
skeletal muscle tissue
Tissue term
4
skeletal muscle tissue
1
muscle
1
skeletal muscle
Organ
4
musculature of body
Life stage
4
adult
Date released
2
April, 2025
2
July, 2025
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
2
AMP-T2D consortium
2
Stephen Parker, UMich
Project
4
AMP
RFA
2
AMP
2
AMP2
Showing 4 of 4 results
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR603575
released
Embeddings file set
: This snRNAseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR186384
released
Embeddings file set
: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP