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Clear Filters
Annotation type
  • 2candidate regulatory elements
  • 1accessible chromatin
  • 1chromatin state
  • 1target gene predictions
  • 1variant allelic effects
Annotation Category
  • 4cis-regulatory elements
  • 1Genetic variant effects
  • 1Target gene links
Annotation type Category
  • 5DNase-seq
  • 4ChIP-seq
Available data
  • 5bed bed3+
  • 1bed bed9
  • 1bigWig
File set status
  • 6released
Genome assembly (visualization)
  • 6hg19
  • 2GRCh38
Organism
  • 6Homo sapiens
Biosample type
  • 6primary cell
Biosample term
  • 67muscle of arm
  • 58muscle of leg
  • 54muscle of back
  • 20psoas muscle
  • 18gastrocnemius medialis
  • 17muscle of trunk
  • 16skeletal muscle satellite cell
  • 16skeletal muscle tissue
  • 12skeletal muscle
  • 11esophagus muscularis mucosa
  • 9skeletal muscle fiber
  • 9stomach smooth muscle
  • 7LHCN-M2
  • 7gastroesophageal sphincter
  • 7type I muscle cell
  • 7type II muscle cell
  • 6skeletal muscle cell
  • 5A673
  • 5SJCRH30
  • 5gastrocnemius medialis(Muscle - Skeletal)
  • 5left ventricle myocardium
  • 5myotube
  • 4rectum smooth muscle tissue
  • 3type 1 muscle cell
  • 3type 2a muscle cell
  • 3type 2x muscle cell
  • 2 hindlimb muscle
  • 2 muscle of leg
  • 2cardiac muscle myoblast
  • 2forelimb muscle
  • 2respiratory system smooth muscle
  • 2somatic muscle myotube
  • 1aortic smooth muscle cell
  • 1esophagus - gastroesophageal junction
  • 1esophagus - muscularis
  • 1hindlimb muscle
  • 1rectal smooth muscle tissue
  • 1smooth muscle tissue
Organ
  • 6musculature of body
Life stage
  • 4unknown
Date released
  • 3September, 2022
  • 1February, 2021
  • 1January, 2020
  • 1May, 2020
Software used
  • 2r
  • 1chromhmm
  • 1deltasvm
  • 1encode-ccres
  • 1macs
Lab
  • 6AMP-T2D consortium
Project
  • 6AMP
Collection Tags
  • 3EpiMap
  • 1DGA
  • 1ENCODE
  • 1T2DKP
RFA
  • 6AMP

Showing 6 of 6 results

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  • FileSet

    DSR404VRF

    released

    Annotation file set: Candidate regulatory elements for BSS01572 skeletal muscle cell from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR722IWA

    released

    Annotation file set: Target gene predictions for BSS01572 skeletal muscle cell from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR253DCD

    released

    Annotation file set: Chromatin states for BSS01572 using the 18-state Roadmap model from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR101OOW

    released

    Annotation file set: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE skeletal muscle cell
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR592EHG

    released

    Annotation file set: Genetic variants with deltaSVM predictions in skeletal muscle cell DHS-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR310QRT

    released

    Annotation file set: Accessible chromatin annotation of skeletal muscle cell from DHS-seq
    Lab: AMP-T2D consortium
    Project: AMP
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