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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
2
variant allelic effects
Annotation Category
5
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
7
snATAC-seq
Available data
7
bed bed3+
3
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
35
muscle of arm
32
muscle of leg
28
muscle of back
16
coronary artery
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
14
tibial artery
12
psoas muscle
11
ascending aorta
10
gastrocnemius medialis
9
muscle of trunk
9
skeletal muscle satellite cell
9
skeletal muscle tissue
8
aorta
8
choroid plexus epithelial cell
7
esophagus muscularis mucosa
7
skeletal muscle fiber
7
thoracic aorta
6
dermis blood vessel endothelial cell
6
fibroblast of pulmonary artery
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
LHCN-M2
5
gastroesophageal sphincter
5
myotube
5
pulmonary artery endothelial cell
5
smooth muscle cell of the coronary artery
5
stomach smooth muscle
4
aortic endothelial cell
4
dermis lymphatic vessel endothelial cell
4
dermis microvascular lymphatic vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
gastrocnemius medialis(Muscle - Skeletal)
4
left ventricle myocardium
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
3
A673
3
SJCRH30
3
brain microvascular endothelial cell
3
fibroblast of the aortic adventitia
3
kidney capillary endothelial cell
3
lung microvascular endothelial cell
2
hindlimb muscle
2
muscle of leg
2
Afferent / Efferent Arteriole Endothelial Cell
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Glomerular Capillary Endothelial Cell
2
Lymphatic Endothelial Cell
2
Peritubular Capillary Endothelial Cell
2
Vascular Smooth Muscle Cell / Pericyte
2
capillary endothelial cell
2
cardiac muscle myoblast
2
forelimb muscle
2
rectum smooth muscle tissue
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
2
vascular associated smooth muscle cell
2
vein endothelial cell
1
brain microvascular endothelial cell
1
abdominal aorta artery
1
aorta wall
1
aortic smooth muscle cell
1
cardiac fibroblast
1
circle of Willis
1
endothelial cell of coronary artery
1
hindlimb muscle
1
placental villus capillary endothelial cell
1
rectal smooth muscle tissue
1
smooth muscle tissue
Organ
7
musculature of body
0
vasculature
Date released
4
February, 2024
3
November, 2021
Software used
5
macs
2
deeptools
2
deltasvm
r
2
samtools
2
umitools
Lab
5
Bing Ren, UCSD
2
Stephen Parker, UMich
Project
4
AMP
3
ENCODE
RFA
3
ENCODE3
2
AMP
2
AMP2
organ_slims!
spleen
software_used.software.name!
r
Showing 7 of 7 results
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Download
FileSet
DSR584RYA
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR222MBS
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR958BVX
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR887UQH
released
Annotation file set
: Cell type chromatin broad peaks and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR353GUO
released
Annotation file set
: Cell type chromatin broad peaks and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR776HHT
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR640ZDY
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP