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Citing CMDGA
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Embeddings type
2
Accessible chromatin
1
Gene expression
Embeddings Category
3
umap
Underlying Assay
1
10X snATAC-seq
1
10X snRNA-seq
1
sciATAC-seq
Available data
3
h5ad
3
mtx
3
tsv
File set status
3
released
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
4
islet of Langerhans
4
pancreas
3
heart
3
lung
2
kidney
2
peripheral blood mononuclear cell
2
skeletal muscle tissue
1
bladder organ
1
blood
1
bone marrow
1
carotid canal
1
cell
1
eye
1
fat pad
1
immune system
1
large intestine
1
liver
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
prostate gland
1
skin of body
1
spleen
1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
Tissue term
2
skeletal muscle tissue
1
tissues
Organ
2
musculature of body
Date released
2
May, 2022
1
November, 2021
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
organ_slims!
epithelium
vasculature
tissue_term_name!
small intestine
Showing 3 of 3 results
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FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE