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Getting started
Schema
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
1
bed bed9
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
65
primary cell
5
in vitro differentiated cells
Biosample term
55
hematopoietic multipotent progenitor cell
47
neural progenitor cell
24
adipocyte
14
embryonic stem cell
12
mesenchymal stem cell
11
cardiomyocytes
10
endodermal cell
10
progenitor cell of endocrine pancreas
9
cardiac muscle cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
mesendoderm
9
neuronal stem cell
8
T-cell acute lymphoblastic leukemia
8
cardiomyocytes (cardiac muscle cell)
8
mesodermal cell
8
neuroblastoma cell line
7
bipolar neuron
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
dendritic cell
6
muscle cell
6
retinal pigment epithelial cell
6
trophoblast cell
5
SGBS preadipocytes
5
hepatocyte
5
islet precursor cell
5
neural cell
5
smooth muscle cell
4
B cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
adipose-derived stem cell
4
colon adenocarcinoma
4
ectodermal cell
4
neuron
4
olfactory neurosphere cell line
4
rhabdomyosarcoma cell
3
cardiac mesoderm primordium
3
cardiac myoblast
3
cardiovascular progenitor cell
3
esophageal adenocarcinoma
3
foreskin keratinocyte
3
foreskin melanocyte
3
hepatocyte(AFP)
3
iPS DF 4.7 Cell Line
3
mammary gland epithelial cell
3
myocyte
3
myotube
3
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
2
BICR 31
2
CD4-positive helper T cell
2
CD8-Positive T-Lymphocytes
2
EAhy 926 cell
2
T-lymphoma cell line
2
Th1 cell
2
atypical teratoid rhabdoid tumor
2
brain
2
chronic myelomonocytic leukemia
2
colorectal adenocarcinoma
2
dermis microvascular lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
diffuse intrinsic pontine glioma
2
diffuse large B-cell lymphoma
2
ecto neural progenitor cell
2
endometrial stromal cell
2
endometrial stromal tumor
2
endometriosis
2
endothelial cell
2
epidermal stem cell
2
erythroid progenitor cell
2
excitatory neuron
2
fibroblast
2
hippocampal neuron
2
lower motor neuron
2
lymphocyte of B lineage (iPSC)
2
medulloblastoma cell line
2
mesothelial cell of epicardium
2
natural killer cell
2
neuroepithelial stem cell
2
osteosarcoma
1
Adipose SGBS cell line (adipocyte)
1
Barrett's epithelial cell line
1
CD8-positive, alpha-beta T cell
1
Chondroid Chordoma
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
Uveal Melanoma
1
astrocyte
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiac precursors
1
chondroblastoma
1
chronic lymphocytic leukemia
1
colon carcinoma
1
colonic adenoma cell
1
colorectal cancer
1
colorectal carcinoma
1
embryonic fibroblast
1
endometrioid carcinoma
1
ependymoma
1
erythroid cell
1
fibroblast-like synoviocyte
1
glutamatergic neuron
1
hESC cell
1
head and neck squamous cell carcinoma BICR 16
1
head and neck squamous cell carcinoma BICR 6
1
hematopoietic stem cell
1
hepatocellular carcinoma
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
lymphoid progenitor cell
1
melanoma cell line
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
mid-neurogenesis radial glial cells
1
nephron progenitor cell
1
neural crest cell
1
neuron cell of Hypothalamus (neuron)
1
osteocyte
1
radial glial cell
1
renal cell carcinoma
1
secretory cell
1
skeletal muscle myoblast
1
skin fibroblast
1
stem cell
1
type B pancreatic cell
1
white adipose cell
Life stage
4
embryonic
Date released
3
September, 2022
1
February, 2021
1
May, 2021
Software used
3
r
1
chromhmm
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
Collection Tags
3
EpiMap
1
AMP
1
ENCODE
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR087ISF
released
Annotation file set
: Candidate regulatory elements for BSS01612 smooth muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR234JGB
released
Annotation file set
: Target gene predictions for BSS01612 smooth muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR708TJP
released
Annotation file set
: Chromatin states for BSS01612 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR656HJI
released
Annotation file set
: Gene expression annotation of smooth muscle cell_SMC ISL1-SMMHC+ on day 10 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR634BEA
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE smooth muscle cell
Lab:
AMP-T2D consortium
Project:
AMP