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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
DNase-seq
2
ChIP-seq
Available data
3
bed bed3+
1
bed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
115
monocyte
47
CD8-positive, alpha-beta T cell
30
endothelial cell
29
fibroblast
28
common myeloid progenitor, CD34-positive
26
macrophage
23
CD14-positive monocyte
23
hepatocyte
22
B cell
20
pericyte cell
19
smooth muscle cell
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
15
CD4-positive, alpha-beta T cell
15
regulatory T cell
14
CD4-positive, alpha-beta memory T cell
14
T cell
14
astrocyte
14
foreskin fibroblast
13
keratinocyte
13
mammary epithelial cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
natural killer cell
13
osteoblast
12
excitatory neuron
12
pancreatic ductal cell
11
erythroblast
11
foreskin keratinocyte
11
neutrophil
11
skeletal muscle myoblast
10
T-helper 1 cell
10
fibroblast of lung
10
trophoblast cell
9
mature neutrophil
9
pancreatic acinar cell
9
pancreatic beta cell
9
skeletal muscle satellite cell
8
CD8-positive, alpha-beta memory T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
bronchial epithelial cell
8
glutamatergic neuron
8
mononuclear cell
8
pancreatic alpha cell
8
retinal pigment epithelial cell
7
cardiac muscle cell
7
mammary gland epithelial cell
7
neurosphere
7
pancreatic delta cell
7
skeletal muscle fiber
7
type II pneumocyte
6
T-cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis blood vessel endothelial cell
6
enterocyte
6
fibroblast of cardiac tissue
6
fibroblast of dermis
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
hepatic stellate cell
6
memory B cell
6
mesenchymal stem cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
alternatively activated macrophage
5
basal cell
5
choroid plexus epithelial cell
5
epithelial cell of prostate
5
epithelial cell of proximal tubule
5
gabaergic neuron
5
glomerular endothelial cell
5
inhibitory neuron
5
kidney glomerular epithelial cell
5
kidney tubule cell
5
luminal epithelial cell of mammary gland
5
mast cell
5
myofibroblast cell
5
naive B cell
5
plasma cell
5
pulmonary artery endothelial cell
5
renal cortical epithelial cell
5
skin fibroblast
5
tracheal epithelial cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of esophagus
4
fibroblast of breast
4
foreskin melanocyte
4
glomerular visceral epithelial cell
4
inflammatory macrophage
4
kidney epithelial cell
4
megakaryocyte
4
mesothelial cell
4
myoepithelial cell of mammary gland
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Ishikawa
3
T follicular helper cell
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
adipocyte
3
blood cell
3
bone marrow cell
3
brain microvascular endothelial cell
3
brain pericyte
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
erythroid cell
3
fibroblast of peridontal ligament
3
fibroblast of the aortic adventitia
3
goblet cell
3
iris pigment epithelial cell
3
kidney capillary endothelial cell
3
lung microvascular endothelial cell
3
microglial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive T cell
3
naive t cell
3
neoplastic cell
3
non-pigmented ciliary epithelial cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
schwann cell
3
thyroid follicular cell
3
type B pancreatic cell
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Adipose stromal cell
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Muller cell
2
Myofibroblast
2
Natural Killer T Cell
Organ
4
vasculature
Life stage
2
unknown
Date released
1
February, 2021
1
January, 2020
1
May, 2020
1
September, 2022
Software used
r
1
chromhmm
1
deltasvm
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
files.file_type!
bigBed narrowPeak
month_released!
February, 2020
software_used.software.name!
r
Showing 4 of 4 results
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Download
FileSet
DSR431GJG
released
Annotation file set
: Chromatin states for BSS01606 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR828HMS
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE smooth muscle cell of the brain vasculature
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR483EJJ
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain vascular smooth muscle cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR249BQC
released
Annotation file set
: Accessible chromatin annotation of brain vascular smooth muscle cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP